{"title":"Determining the function of ripening associated genes and biochemical changes during tomato (Solanum lycopersicum L.) fruit maturation.","authors":"Darshan Dorairaj, Shivangi Sharma, Kiran Suresh Mawale, Bijesh Puthusseri, Giridhar Parvatam, Nandini Prasad Shetty","doi":"10.1007/s10529-025-03565-9","DOIUrl":null,"url":null,"abstract":"<p><p>This article examines biochemical alterations and gene expression changes during tomato fruit physiology. The chroma index increases from mature green (41.27) to red ripe (48.36) stages, and the texture softens from mature green (43.56 N) to red ripe (24.75 N). Reducing sugar and total carotenoid levels rise at the red ripe stage. Free radical content was elevated in the early stages (7 nM) of ripening and declined at the later stages (4 nM). The specific activity of α-mannosidase and β-N-acetyl hexosaminidase was high at the breaker (0.077 & 0.075 U/mg, respectively) stages, while polygalacturonase activity was high at red ripe (1.173 U/mg) stage. qPCR experiments revealed that the α-mannosidase was upregulated during the breaker (1.2 fold) stages of tomato ripening, the β-N-acetyl Hexosaminidase was upregulated throughout the breaker (2 fold), and pink (1.2 fold) stages of tomato ripening, and the β-xylosidase was upregulated significantly during the breaker stage (3.9 fold) of tomato ripening. The current findings revealed that the α-Mannosidase (0.77), β-N-acetylhexosaminidase (0.99), xylosidase (0.85), ethylene-responsive factors (0.86), aminocylco propane carboxylic oxidase (0.90), and pectin methylesterase (0.83), were significantly associated with textural softening. Polygalacturonase (0.75) positively correlated to reducing sugar formation, aminocylco propane carboxylic synthase 4 (0.96) expression correlates with chroma changes during tomato fruit ripening. These correlations illustrate the complex interplay between gene expression and the physical and biochemical changes occurring during tomato fruit ripening.</p>","PeriodicalId":8929,"journal":{"name":"Biotechnology Letters","volume":"47 1","pages":"22"},"PeriodicalIF":2.1000,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biotechnology Letters","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s10529-025-03565-9","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
This article examines biochemical alterations and gene expression changes during tomato fruit physiology. The chroma index increases from mature green (41.27) to red ripe (48.36) stages, and the texture softens from mature green (43.56 N) to red ripe (24.75 N). Reducing sugar and total carotenoid levels rise at the red ripe stage. Free radical content was elevated in the early stages (7 nM) of ripening and declined at the later stages (4 nM). The specific activity of α-mannosidase and β-N-acetyl hexosaminidase was high at the breaker (0.077 & 0.075 U/mg, respectively) stages, while polygalacturonase activity was high at red ripe (1.173 U/mg) stage. qPCR experiments revealed that the α-mannosidase was upregulated during the breaker (1.2 fold) stages of tomato ripening, the β-N-acetyl Hexosaminidase was upregulated throughout the breaker (2 fold), and pink (1.2 fold) stages of tomato ripening, and the β-xylosidase was upregulated significantly during the breaker stage (3.9 fold) of tomato ripening. The current findings revealed that the α-Mannosidase (0.77), β-N-acetylhexosaminidase (0.99), xylosidase (0.85), ethylene-responsive factors (0.86), aminocylco propane carboxylic oxidase (0.90), and pectin methylesterase (0.83), were significantly associated with textural softening. Polygalacturonase (0.75) positively correlated to reducing sugar formation, aminocylco propane carboxylic synthase 4 (0.96) expression correlates with chroma changes during tomato fruit ripening. These correlations illustrate the complex interplay between gene expression and the physical and biochemical changes occurring during tomato fruit ripening.
本文研究了番茄果实生理过程中的生化变化和基因表达变化。色度指数从青熟期(41.27)到红熟期(48.36)上升,质地从青熟期(43.56 N)到红熟期(24.75 N)软化,还原糖和总类胡萝卜素含量在红熟期上升。自由基含量在成熟早期(7 nM)升高,在成熟后期(4 nM)下降。α-甘露糖苷酶和β- n -乙酰己糖苷酶的比活性在破穗期最高(分别为0.077和0.075 U/mg),聚半乳糖醛酸酶的比活性在红熟期最高(1.173 U/mg)。qPCR实验结果表明,α-甘露糖苷酶在番茄的破碎期(1.2倍)上调,β- n -乙酰己糖苷酶在番茄的破碎期(2倍)和粉红期(1.2倍)上调,β-木糖苷酶在番茄成熟的破碎期(3.9倍)显著上调。结果表明,α-甘露糖苷酶(0.77)、β- n -乙酰己糖苷酶(0.99)、木糖苷酶(0.85)、乙烯响应因子(0.86)、氨基基丙烷羧酸氧化酶(0.90)和果胶甲基化酯酶(0.83)与质构软化显著相关。聚半乳糖醛酸酶(0.75)的表达与还原糖的形成呈正相关,氨基基丙烷羧酸合成酶4(0.96)的表达与番茄果实成熟过程中色度的变化相关。这些相关性说明了基因表达与番茄果实成熟过程中发生的物理生化变化之间的复杂相互作用。
期刊介绍:
Biotechnology Letters is the world’s leading rapid-publication primary journal dedicated to biotechnology as a whole – that is to topics relating to actual or potential applications of biological reactions affected by microbial, plant or animal cells and biocatalysts derived from them.
All relevant aspects of molecular biology, genetics and cell biochemistry, of process and reactor design, of pre- and post-treatment steps, and of manufacturing or service operations are therefore included.
Contributions from industrial and academic laboratories are equally welcome. We also welcome contributions covering biotechnological aspects of regenerative medicine and biomaterials and also cancer biotechnology. Criteria for the acceptance of papers relate to our aim of publishing useful and informative results that will be of value to other workers in related fields.
The emphasis is very much on novelty and immediacy in order to justify rapid publication of authors’ results. It should be noted, however, that we do not normally publish papers (but this is not absolute) that deal with unidentified consortia of microorganisms (e.g. as in activated sludge) as these results may not be easily reproducible in other laboratories.
Papers describing the isolation and identification of microorganisms are not regarded as appropriate but such information can be appended as supporting information to a paper. Papers dealing with simple process development are usually considered to lack sufficient novelty or interest to warrant publication.