{"title":"Estimating the Strength of Binding Affinity via Delta-Delta-G for Hit Screening After a Deming Regression Calibration.","authors":"Kanaka Tatikola, Javier Cabrera","doi":"10.1002/pst.2460","DOIUrl":null,"url":null,"abstract":"<p><p>In compound hit screening, an important chemical property is target binding affinity, represented by a parameter ΔΔG. You can measure ΔΔG experimentally (ΔΔG<sub>exp</sub>) or by calculations via simulations (ΔΔG<sub>calc</sub>). Because it is expensive to measure ΔΔG experimentally, only a few experimental runs are performed. The relationship between the experimental data and the calculated results is a straight line with a slope that is not necessarily one. The goal is to estimate the linear relationship between ΔΔG<sub>exp</sub> and ΔΔG<sub>calc</sub> by fitting a Deming regression model that will be used to predict future values of ΔΔG<sub>true</sub> based on the obtained ΔΔG<sub>calc</sub>.</p>","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":"24 1","pages":"e2460"},"PeriodicalIF":1.3000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pharmaceutical Statistics","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1002/pst.2460","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PHARMACOLOGY & PHARMACY","Score":null,"Total":0}
引用次数: 0
Abstract
In compound hit screening, an important chemical property is target binding affinity, represented by a parameter ΔΔG. You can measure ΔΔG experimentally (ΔΔGexp) or by calculations via simulations (ΔΔGcalc). Because it is expensive to measure ΔΔG experimentally, only a few experimental runs are performed. The relationship between the experimental data and the calculated results is a straight line with a slope that is not necessarily one. The goal is to estimate the linear relationship between ΔΔGexp and ΔΔGcalc by fitting a Deming regression model that will be used to predict future values of ΔΔGtrue based on the obtained ΔΔGcalc.
期刊介绍:
Pharmaceutical Statistics is an industry-led initiative, tackling real problems in statistical applications. The Journal publishes papers that share experiences in the practical application of statistics within the pharmaceutical industry. It covers all aspects of pharmaceutical statistical applications from discovery, through pre-clinical development, clinical development, post-marketing surveillance, consumer health, production, epidemiology, and health economics.
The Journal is both international and multidisciplinary. It includes high quality practical papers, case studies and review papers.