In silico design of an epitope-based vaccine ensemble for fasliolopsiasis.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY Frontiers in Genetics Pub Date : 2025-01-22 eCollection Date: 2024-01-01 DOI:10.3389/fgene.2024.1451853
Ruchishree Konhar, Kanhu Charan Das, Aiboklang Nongrum, Rohan Raj Samal, Shailesh Kumar Sarangi, Devendra Kumar Biswal
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Abstract

Introduction: Fasciolopsiasis, a food-borne intestinal disease is most common in Asia and the Indian subcontinent. Pigs are the reservoir host, and fasciolopsiasis is most widespread in locations where pigs are reared and aquatic plants are widely consumed. Human infection has been most commonly documented in China, Bangladesh, Southeast Asia, and parts of India. It predominates in school-age children, and significant worm burdens are not uncommon. The causal organism is Fasciolopsis buski, a giant intestinal fluke that infects humans and causes diarrhoea, fever, ascites, and intestinal blockage. The increasing prevalence of medication resistance and the necessity for an effective vaccination make controlling these diseases challenging.

Methods: Over the last decade, we have achieved major advances in our understanding of intestinal fluke biology by in-depth interrogation and analysis of evolving F. buski omics datasets. The creation of large omics datasets for F. buski by our group has accelerated the discovery of key molecules involved in intestinal fluke biology, toxicity, and virulence that can be targeted for vaccine development. Finding successful vaccination antigen combinations from these huge number of genes/proteins in the available omics datasets is the key in combating these neglected tropical diseases. In the present study, we developed an in silico workflow to select antigens for composing a chimeric vaccine, which could be a significant technique for developing a fasciolopsiasis vaccine that prevents the parasite from causing serious harm.

Results and discussion: This chimeric vaccine can now be tested experimentally and compared to other vaccine candidates to determine its potential influence on human health. Although the results are encouraging, additional validation is needed both in vivo and in vitro. Considering the extensive genetic data available for intestinal flukes that has expanded with technological advancements, we may need to reassess our methods and suggest a more sophisticated technique in the future for identifying vaccine molecules.

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基于表位的镰形虫病疫苗集合的计算机设计。
片形虫病是一种食源性肠道疾病,在亚洲和印度次大陆最为常见。猪是宿主,片形吸虫病在养猪和广泛食用水生植物的地方最为普遍。人类感染在中国、孟加拉国、东南亚和印度部分地区最为常见。它在学龄儿童中占主导地位,严重的蠕虫负担并不罕见。致病生物是buski片形虫,一种巨大的肠道吸虫,感染人类并引起腹泻、发烧、腹水和肠梗阻。耐药性的日益普遍和有效疫苗接种的必要性使得控制这些疾病具有挑战性。方法:在过去的十年中,我们通过深入询问和分析不断发展的F. buski组学数据集,在我们对肠道吸虫生物学的理解方面取得了重大进展。我们的团队创建了大量的布氏f菌组学数据集,加速了对肠道吸虫生物学、毒性和毒力的关键分子的发现,这些分子可以作为疫苗开发的目标。在现有的组学数据集中,从这些数量巨大的基因/蛋白质中找到成功的疫苗接种抗原组合是防治这些被忽视的热带病的关键。在本研究中,我们开发了一种用于合成嵌合疫苗的抗原的计算机工作流程,这可能是开发防止寄生虫造成严重危害的片形虫病疫苗的重要技术。结果和讨论:现在可以对这种嵌合疫苗进行实验测试,并与其他候选疫苗进行比较,以确定其对人类健康的潜在影响。虽然结果令人鼓舞,但还需要在体内和体外进行进一步的验证。考虑到肠道吸虫的大量遗传数据随着技术的进步而扩大,我们可能需要重新评估我们的方法,并在未来提出一种更复杂的技术来识别疫苗分子。
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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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