Identification of recurrent dynamics in distributed neural populations.

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2025-02-06 eCollection Date: 2025-02-01 DOI:10.1371/journal.pcbi.1012816
Rodrigo Osuna-Orozco, Edward Castillo, Kameron Decker Harris, Samantha R Santacruz
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Abstract

Large-scale recordings of neural activity over broad anatomical areas with high spatial and temporal resolution are increasingly common in modern experimental neuroscience. Recently, recurrent switching dynamical systems have been used to tackle the scale and complexity of these data. However, an important challenge remains in providing insights into the existence and structure of recurrent linear dynamics in neural time series data. Here we test a scalable approach to time-varying autoregression with low-rank tensors to recover the recurrent dynamics in stochastic neural mass models with multiple stable attractors. We demonstrate that the parsimonious representation of time-varying system matrices in terms of temporal modes can recover the attractor structure of simple systems via clustering. We then consider simulations based on a human brain connectivity matrix in high and low global connection strength regimes, and reveal the hierarchical clustering structure of the dynamics. Finally, we explain the impact of the forecast time delay on the estimation of the underlying rank and temporal variability of the time series dynamics. This study illustrates that prediction error minimization is not sufficient to recover meaningful dynamic structure and that it is crucial to account for the three key timescales arising from dynamics, noise processes, and attractor switching.

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分布式神经群体中循环动力学的识别。
在现代实验神经科学中,以高空间和时间分辨率对广泛解剖区域的神经活动进行大规模记录越来越普遍。最近,循环开关动力系统被用来解决这些数据的规模和复杂性。然而,一个重要的挑战仍然是提供对神经时间序列数据中循环线性动力学的存在和结构的见解。在这里,我们测试了一种可扩展的低秩张量时变自回归方法,以恢复具有多个稳定吸引子的随机神经质量模型的循环动力学。我们证明了时变系统矩阵在时间模态上的简约表示可以通过聚类恢复简单系统的吸引子结构。然后,我们考虑了基于人脑连接矩阵在高和低全局连接强度机制下的模拟,并揭示了动态的分层聚类结构。最后,我们解释了预测时间延迟对时间序列动态的潜在秩和时间变异估计的影响。该研究表明,预测误差最小化不足以恢复有意义的动态结构,并且考虑动力学、噪声过程和吸引子转换引起的三个关键时间尺度至关重要。
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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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