{"title":"Generalized end-product feedback circuit can sense high-dimensional environmental fluctuations.","authors":"Fang Yu, Mikhail Tikhonov","doi":"10.1103/PhysRevE.110.064404","DOIUrl":null,"url":null,"abstract":"<p><p>Understanding computational capabilities of simple biological circuits, such as the regulatory circuits of single-cell organisms, remains an active area of research. Recent theoretical work has shown that a simple cross-talk architecture based on end-product inhibition can exhibit predictive behavior by learning fluctuation statistics of one or two environmental parameters. Here we extend this analysis to higher dimensions, i.e., a large number of fluctuating inputs. We show that a generalized version of the cross-talk architecture can learn not only the dominant direction of fluctuations, as shown previously, but also the subdominant modes, orienting its responsiveness spectrum to the fluctuation eigenmodes. We comment on the relevance of our results to living systems at other scales of organization, such as ecosystems of species competing for fluctuating resources.</p>","PeriodicalId":48698,"journal":{"name":"Physical Review E","volume":"110 6-1","pages":"064404"},"PeriodicalIF":2.2000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical Review E","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1103/PhysRevE.110.064404","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PHYSICS, FLUIDS & PLASMAS","Score":null,"Total":0}
引用次数: 0
Abstract
Understanding computational capabilities of simple biological circuits, such as the regulatory circuits of single-cell organisms, remains an active area of research. Recent theoretical work has shown that a simple cross-talk architecture based on end-product inhibition can exhibit predictive behavior by learning fluctuation statistics of one or two environmental parameters. Here we extend this analysis to higher dimensions, i.e., a large number of fluctuating inputs. We show that a generalized version of the cross-talk architecture can learn not only the dominant direction of fluctuations, as shown previously, but also the subdominant modes, orienting its responsiveness spectrum to the fluctuation eigenmodes. We comment on the relevance of our results to living systems at other scales of organization, such as ecosystems of species competing for fluctuating resources.
期刊介绍:
Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.