Generalized end-product feedback circuit can sense high-dimensional environmental fluctuations.

IF 2.4 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS Physical Review E Pub Date : 2024-12-01 DOI:10.1103/PhysRevE.110.064404
Fang Yu, Mikhail Tikhonov
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Abstract

Understanding computational capabilities of simple biological circuits, such as the regulatory circuits of single-cell organisms, remains an active area of research. Recent theoretical work has shown that a simple cross-talk architecture based on end-product inhibition can exhibit predictive behavior by learning fluctuation statistics of one or two environmental parameters. Here we extend this analysis to higher dimensions, i.e., a large number of fluctuating inputs. We show that a generalized version of the cross-talk architecture can learn not only the dominant direction of fluctuations, as shown previously, but also the subdominant modes, orienting its responsiveness spectrum to the fluctuation eigenmodes. We comment on the relevance of our results to living systems at other scales of organization, such as ecosystems of species competing for fluctuating resources.

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广义终端产品反馈电路可以感知高维环境波动。
了解简单生物电路的计算能力,如单细胞生物的调节电路,仍然是一个活跃的研究领域。最近的理论研究表明,基于最终产物抑制的简单相声结构可以通过学习一个或两个环境参数的波动统计来表现出预测行为。在这里,我们将这种分析扩展到更高的维度,即大量波动的输入。我们证明了一个广义版本的串扰结构不仅可以学习波动的主导方向,而且可以学习次主导模式,将其响应谱定向到波动特征模态。我们评论了我们的结果与其他组织尺度的生命系统的相关性,例如物种竞争波动资源的生态系统。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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