Gradient sensing limit of an elongated cell with orientational control.

IF 2.4 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS Physical Review E Pub Date : 2024-12-01 DOI:10.1103/PhysRevE.110.064407
Kento Nakamura, Tetsuya J Kobayashi
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Abstract

Eukaryotic cells perform chemotaxis by determining the direction of chemical gradients based on stochastic sensing of concentrations at the cell surface. To examine the efficiency of this process, previous studies have investigated the limit of estimation accuracy for gradients. However, most studies have treated a circular cell shape, and the few considering elongated shapes assume the elongated direction as fixed. This leaves the question of how adaptive regulation of cell shape affects the estimation limit. Dynamics of cell shape during gradient sensing is biologically ubiquitous and can influence the estimation by altering the way the concentration is measured, and cells may strategically regulate their shape to improve estimation accuracy. To address this gap, we investigate the estimation limits in dynamic situations where elongated cells change their orientation adaptively depending on the sensed signal. We approach this problem by analyzing the stationary solution of the Bayesian nonlinear filtering equation. By applying diffusion approximation to the ligand-receptor binding process and the Laplace method for the posterior expectation under a high signal-to-noise ratio regime, we obtain an analytical expression for the estimation limit. This expression indicates that estimation accuracy can be improved by aligning the elongated direction perpendicular to the estimated direction, which is also confirmed by numerical simulations. Our analysis provides a basis for clarifying the interplay between estimation and control in gradient sensing and sheds light on how cells optimize their shape to enhance chemotactic efficiency.

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具有方向控制的细长细胞的梯度传感极限。
真核细胞通过对细胞表面浓度的随机感知来确定化学梯度的方向,从而实现趋化。为了检验这一过程的效率,以前的研究已经研究了梯度估计精度的极限。然而,大多数研究都是处理圆形细胞形状,而少数考虑拉长形状的研究假设拉长方向是固定的。这就留下了细胞形状的适应性调节如何影响估计极限的问题。在梯度传感过程中,细胞形状的动态变化在生物学上是普遍存在的,并且可以通过改变测量浓度的方式来影响估计,细胞可以策略性地调节其形状以提高估计精度。为了解决这一差距,我们研究了在细长细胞根据感知信号自适应改变其方向的动态情况下的估计极限。我们通过分析贝叶斯非线性滤波方程的平稳解来解决这个问题。通过对配体-受体结合过程的扩散近似和高信噪比下后验期望的拉普拉斯方法,我们得到了估计极限的解析表达式。该表达式表明,将延长方向对准垂直于估计方向可以提高估计精度,数值模拟也证实了这一点。我们的分析为澄清梯度传感中估计和控制之间的相互作用提供了基础,并揭示了细胞如何优化其形状以提高趋化效率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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