Broadening the Scope of Neural Network Potentials through Direct Inclusion of Additional Molecular Attributes.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-02-25 Epub Date: 2025-02-11 DOI:10.1021/acs.jctc.4c01625
Guillem Simeon, Antonio Mirarchi, Raul P Pelaez, Raimondas Galvelis, Gianni De Fabritiis
{"title":"Broadening the Scope of Neural Network Potentials through Direct Inclusion of Additional Molecular Attributes.","authors":"Guillem Simeon, Antonio Mirarchi, Raul P Pelaez, Raimondas Galvelis, Gianni De Fabritiis","doi":"10.1021/acs.jctc.4c01625","DOIUrl":null,"url":null,"abstract":"<p><p>Most state-of-the-art neural network potentials do not account for molecular attributes other than atomic numbers and positions, which limits its range of applicability by design. In this work, we demonstrate the importance of including additional electronic attributes in neural network potential representations with a minimal architectural change to TensorNet, a state-of-the-art equivariant model based on Cartesian rank-2 tensor representations. By performing experiments on both custom-made and public benchmarking data sets, we show that this modification resolves input degeneracy issues stemming from the use of atomic numbers and positions alone, while enhancing the model's predictive accuracy across diverse chemical systems with different charge or spin states. This is accomplished without tailored strategies or the inclusion of physics-based energy terms, while maintaining efficiency and accuracy. These findings should furthermore encourage researchers to train and use models incorporating these additional representations.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"1831-1837"},"PeriodicalIF":5.5000,"publicationDate":"2025-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12131224/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01625","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/11 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Most state-of-the-art neural network potentials do not account for molecular attributes other than atomic numbers and positions, which limits its range of applicability by design. In this work, we demonstrate the importance of including additional electronic attributes in neural network potential representations with a minimal architectural change to TensorNet, a state-of-the-art equivariant model based on Cartesian rank-2 tensor representations. By performing experiments on both custom-made and public benchmarking data sets, we show that this modification resolves input degeneracy issues stemming from the use of atomic numbers and positions alone, while enhancing the model's predictive accuracy across diverse chemical systems with different charge or spin states. This is accomplished without tailored strategies or the inclusion of physics-based energy terms, while maintaining efficiency and accuracy. These findings should furthermore encourage researchers to train and use models incorporating these additional representations.

Abstract Image

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
通过直接包含额外的分子属性来扩大神经网络电位的范围。
大多数最先进的神经网络电位不考虑原子序数和位置以外的分子属性,这限制了其设计的适用范围。在这项工作中,我们展示了在神经网络电位表示中包含额外电子属性的重要性,并对TensorNet进行了最小的架构更改,TensorNet是一种基于笛卡尔秩2张量表示的最先进的等变模型。通过在定制和公共基准数据集上进行实验,我们表明这种修改解决了仅使用原子序数和位置引起的输入简并问题,同时提高了模型在具有不同电荷或自旋态的不同化学系统中的预测精度。在保持效率和准确性的同时,无需定制策略或包含基于物理的能量术语即可完成。这些发现应该进一步鼓励研究人员训练和使用包含这些额外表示的模型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
期刊最新文献
Ionization Potentials at Mean-Field Computational Cost: The Extended Koopmans' Framework for pCCD. An Active Learning Algorithm for Identifying Transition States on a Potential Energy Surface. How Long-Range Are Three-Body "Exchange" Interactions in Liquid Water? Correction to "From PECs to Spectrum and From Spectrum to PECs: A Morse Protocol for Diatomic X-ray Absorption". Fast Generation of Simulation-Quality Structural Ensembles of Mixed-Chirality Cyclic Peptides via Diffusion Models.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1