Optogenetic Modification of Glycerol Production in Wine Yeast.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-03-21 Epub Date: 2025-02-14 DOI:10.1021/acssynbio.4c00654
Diego Ruiz, Claudia Inzunza, Javiera Barría, Camila Baeza, Antonio Molina, Francisco A Cubillos, Francisco Salinas
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Abstract

The wine strains of Saccharomyces cerevisiae transform glucose into ethanol and other byproducts such as glycerol and acetate. The balance of these metabolites is important during the fermentation process, which impacts the organoleptic properties of wines. Ethanol and glycerol productions are mainly controlled by the ADH1 and GPD1 genes, which encode for the alcohol dehydrogenase and glycerol-3-phosphate-dehydrogenase enzymes, respectively. Genetic modification of these genes can thus be used to alter the levels of the corresponding metabolites and to reroute fermentation. In this work, we used an optogenetic system named FUN-LOV (FUNgal-Light Oxygen Voltage) to regulate the expression of ADH1 and GPD1 in a wine yeast strain using light. Initially, we confirmed the light-controlled expression of GPD1 and ADH1 in the engineered strains via RT-qPCR and a translational reporter, respectively. To characterize the generated yeast strains, we performed growth curve assays and laboratory-scale fermentations, observing phenotypic differences between illumination conditions that confirm the optogenetic control of the target genes. We also monitored glucose consumption and ethanol and glycerol productions during a fermentation time course, observing that the optogenetic control of GPD1 increased glycerol production under constant illumination without affecting ethanol production. Interestingly, the optogenetic control of ADH1 showed an inverted phenotype, where glycerol production increased under constant darkness conditions. Altogether, our results highlight the feasibility of using optogenetic tools to control yeast fermentation in a wine yeast strain, which allows changing the balance of metabolic products of interest in a light-dependent manner.

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酒酵母产甘油的光遗传修饰。
酿酒酵母的酿酒菌株将葡萄糖转化为乙醇和其他副产品,如甘油和醋酸酯。这些代谢物的平衡在发酵过程中非常重要,它影响着葡萄酒的感官特性。乙醇和甘油的生产主要受ADH1和GPD1基因控制,这两个基因分别编码乙醇脱氢酶和甘油-3-磷酸脱氢酶。因此,这些基因的遗传修饰可以用来改变相应代谢物的水平,并改变发酵的路线。在这项工作中,我们利用FUN-LOV(真菌-光氧电压)光遗传系统来调节酒酵母菌ADH1和GPD1的表达。首先,我们分别通过RT-qPCR和翻译报告基因证实了GPD1和ADH1在工程菌株中的光控表达。为了对生成的酵母菌株进行表征,我们进行了生长曲线分析和实验室规模的发酵,观察了不同光照条件下的表型差异,从而证实了靶基因的光遗传控制。我们还监测了发酵过程中的葡萄糖消耗、乙醇和甘油产量,观察到GPD1的光遗传控制在恒定光照下增加了甘油产量,而不影响乙醇产量。有趣的是,ADH1的光遗传控制显示出倒置的表型,在恒定的黑暗条件下甘油产量增加。总之,我们的研究结果强调了使用光遗传学工具来控制葡萄酒酵母菌株中的酵母发酵的可行性,这允许以光依赖的方式改变代谢产物的平衡。
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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
期刊最新文献
Elucidation and Reconstitution of the Andrographolide Biosynthetic Pathway in Saccharomyces cerevisiae. Quantitative Dissection of Agrobacterium Virulence to Generate a Synthetic Ti Plasmid. Structure-Aware Multimodal Learning Improves Minor-Class Signal Peptide Prediction. Vacuum and Sonication Treatment Enable Efficient Transient Gene Expression in Various Monocot and Eudicot Plant Seedlings. Noise-Guided Design of Synthetic Protein Waves in Living Cells.
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