R. Shanmugam, P. Dineshkumar, T. Sangeetha, P. Mounica, K. Ramya, A. Elangovan, G. Arivazhagan
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引用次数: 0
Abstract
Context
The dimethyl sulfoxide (DMSO), an excellent solvent, has many applications in biochemical and pharmacological technology and has self-associates. In the S = O stretching region of its infrared (IR) spectrum, it has been reported that two S = O stretching bands, each one for monomer and dimer, and two methyl stretching bands appear. The density functional theory (DFT) calculations reveal that one of the two methyl stretching bands is the dimer S = O stretching band. The analysis of IR spectrum of DMSO-water solution for the S = O stretching bands along with the theoretical bands shows that in the solution with water mole fraction less than 0.3, unlike the literature report that there are no DMSO-water interactions, DMSO-water H-bond complexation takes place. The second-order perturbation energy analysis indicates that the DMSO sulfur can act as H-bond acceptor and DMSO oxygen has three lone pair electrons when complexed with water. The \(\text{O}-\text{H}\cdots \text{S}\) interaction, represented by green region in the isosurfaces, is classified as weak by the topological parameters such as electron density and Laplacian of electron density. The results assume significance in view of understanding its self-association and H-bond interaction with water, of course any solute.
Method
The deconvolution of experimental envelop has been carried out using OriginPro 9.0 software. The DFT calculations were done with B3LYP/6–311 + + G(3df,3pd) basis set using Gaussian09W. The isosurface and topological parameters have been obtained using Multiwfn 3.8 package. The results have been visualized using GaussView 5.0 and visual molecular dynamics (VMD) softwares.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.