Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data.

IF 4.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Plant Methods Pub Date : 2025-02-14 DOI:10.1186/s13007-025-01342-3
Thiago Romanos Benatti, Filipe Manoel Ferreira, Rodolfo Manoel Lemes da Costa, Mario Luiz Teixeira de Moraes, Aurélio Mendes Aguiar, Donizete da Costa Dias, José Wilacildo de Matos, Aline Cristina Miranda Fernandes, Mateus Chagas Andrade, Leandro de Siqueira, Itaraju Junior Baracuhy Brum, André Vieira do Nascimento, Yuri Tani Utsunomiya, José Fernando Garcia, Evandro Vagner Tambarussi
{"title":"Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data.","authors":"Thiago Romanos Benatti, Filipe Manoel Ferreira, Rodolfo Manoel Lemes da Costa, Mario Luiz Teixeira de Moraes, Aurélio Mendes Aguiar, Donizete da Costa Dias, José Wilacildo de Matos, Aline Cristina Miranda Fernandes, Mateus Chagas Andrade, Leandro de Siqueira, Itaraju Junior Baracuhy Brum, André Vieira do Nascimento, Yuri Tani Utsunomiya, José Fernando Garcia, Evandro Vagner Tambarussi","doi":"10.1186/s13007-025-01342-3","DOIUrl":null,"url":null,"abstract":"<p><p>The high productivity of Eucalyptus spp. forest plantations is mainly due to advances in silvicultural techniques and genetic improvement associated with the potential that many species of the genus have for vegetative propagation. However, long reproduction cycles for forest species pose significant challenges for genetic progress via traditional breeding programs. Furthermore, there is often poor correlation between individual (seedling) performance in initial (progeny trials) and final (clonal trials) stages of the breeding program. In this scenario, cloned progeny trials (CPT) offer an alternative to accelerate the eucalypt clone selection pipeline, combining progeny and clonal trials in a single experiment. CPT has the potential to speed up the evaluation process and increase its efficiency by developing new commercial genotypes that were tested as clones from the initial stage of the breeding program. Thus, this study aims to assess the potential of CPT to accelerate eucalypt clone selection programs by estimating the genetic parameters, analyzing responses to selection, and predicting the adequate number of ramets to be used in CPT of Eucalyptus urophylla x Eucalyptus grandis. The results show that when the number of ramets per progeny was decreased from five to one there was a reduction in the estimates of broad-sense heritability and accuracy. However, three ramets/progeny can be used without significant reductions in these estimates. CPT accelerates clonal selection by combining progeny and clonal trial methodologies, enabling an evaluation of performance as both progeny and clone. This capacity is very important for vegetatively propagated crop species such as Eucalyptus. Integrating CPT with SNP markers can offer an alternative to shorten the tree clone selection pipeline, better estimate and decompose the genetic variance components, and improve the correlation between initial and final performance for selected genotypes. This study confirms the potential of CPT to improve selection processes and accelerate genetic gains in the eucalypt clone selection pipeline.</p>","PeriodicalId":20100,"journal":{"name":"Plant Methods","volume":"21 1","pages":"19"},"PeriodicalIF":4.7000,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Methods","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s13007-025-01342-3","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

The high productivity of Eucalyptus spp. forest plantations is mainly due to advances in silvicultural techniques and genetic improvement associated with the potential that many species of the genus have for vegetative propagation. However, long reproduction cycles for forest species pose significant challenges for genetic progress via traditional breeding programs. Furthermore, there is often poor correlation between individual (seedling) performance in initial (progeny trials) and final (clonal trials) stages of the breeding program. In this scenario, cloned progeny trials (CPT) offer an alternative to accelerate the eucalypt clone selection pipeline, combining progeny and clonal trials in a single experiment. CPT has the potential to speed up the evaluation process and increase its efficiency by developing new commercial genotypes that were tested as clones from the initial stage of the breeding program. Thus, this study aims to assess the potential of CPT to accelerate eucalypt clone selection programs by estimating the genetic parameters, analyzing responses to selection, and predicting the adequate number of ramets to be used in CPT of Eucalyptus urophylla x Eucalyptus grandis. The results show that when the number of ramets per progeny was decreased from five to one there was a reduction in the estimates of broad-sense heritability and accuracy. However, three ramets/progeny can be used without significant reductions in these estimates. CPT accelerates clonal selection by combining progeny and clonal trial methodologies, enabling an evaluation of performance as both progeny and clone. This capacity is very important for vegetatively propagated crop species such as Eucalyptus. Integrating CPT with SNP markers can offer an alternative to shorten the tree clone selection pipeline, better estimate and decompose the genetic variance components, and improve the correlation between initial and final performance for selected genotypes. This study confirms the potential of CPT to improve selection processes and accelerate genetic gains in the eucalypt clone selection pipeline.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
求助全文
约1分钟内获得全文 去求助
来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
期刊最新文献
Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data. Robust CRW crops leaf disease detection and classification in agriculture using hybrid deep learning models. SHP Buddy: a QGIS plugin for generating shapefiles to support remote sensing in plant breeding and agronomic experiments. Deep-learning-ready RGB-depth images of seedling development. 3D-CNN detection of systemic symptoms induced by different Potexvirus infections in four Nicotiana benthamiana genotypes using leaf hyperspectral imaging.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1