Machine vision-based detection of key traits in shiitake mushroom caps.

IF 4.1 2区 生物学 Q1 PLANT SCIENCES Frontiers in Plant Science Pub Date : 2025-02-03 eCollection Date: 2025-01-01 DOI:10.3389/fpls.2025.1495305
Jiuxiao Zhao, Wengang Zheng, Yibo Wei, Qian Zhao, Jing Dong, Xin Zhang, Mingfei Wang
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Abstract

This study puts forward a machine vision-based prediction method to solve the problem regarding the measurement of traits in shiitake mushroom caps during the shiitake mushroom breeding process. It enables precise phenotyping through accurate image acquisition and analysis. In practical applications, this method improves the breeding process by rapidly and non-invasively assessing key traits such as the size and color of shiitake mushroom caps, which helps in efficiently screening strains and reducing human errors. Firstly, an edge detection model was established. This model is called KL-Dexined. It achieved an per-image best threshold (OIS) rate of 93.5%. Also, it reached an Optimal Dynamic Stabilization (ODS) rate of 96.3%. Moreover, its Average Precision (AP) was 97.1%. Secondly, the edge information detected by KL-Dexined was mapped onto the original image of shiitake mushroom caps, and using the OpenCV model,11 phenotypic key features including shiitake mushroom caps area, perimeter, and external rectangular length were obtained. Experimental results demonstrated that the R² between predicted values and true values was 0.97 with an RMSE as low as 0.049. After conducting correlation analysis between phenotypic features and shiitake mushroom caps weight, four most correlated phenotypic features were identified: Area, Perimeter, External rectangular width, and Long axis; they were divided into four groups based on their correlation rankings. Finally,M3 group using GWO_SVM algorithm achieved optimal performance among six mainstream machine learning models tested with an R²value of 0.97 and RMSE only at 0.038 when comparing predicted values with true values. Hence, this study provided guidance for predicting key traits in shiitake mushroom caps.

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基于机器视觉的香菇帽关键特征检测。
针对香菇育种过程中香菇帽性状的测量问题,提出了一种基于机器视觉的预测方法。它通过准确的图像采集和分析实现精确的表型。在实际应用中,该方法通过快速和无创地评估香菇帽的大小和颜色等关键性状,改进了育种过程,有助于有效筛选菌株并减少人为错误。首先,建立边缘检测模型;这个模型被称为kl - defined。它实现了每幅图像的最佳阈值(OIS)率为93.5%。最优动态稳定率(ODS)达到96.3%。平均精度(AP)为97.1%。其次,将KL-Dexined检测到的边缘信息映射到香菇帽的原始图像上,利用OpenCV模型得到香菇帽面积、周长、外矩形长度等11个表型关键特征;实验结果表明,预测值与真实值之间的R²为0.97,RMSE低至0.049。通过表型特征与香菇帽重的相关分析,确定了4个最相关的表型特征:面积、周长、外矩形宽度和长轴;根据相关性排名,他们被分为四组。最后,使用GWO_SVM算法的M3组在6个主流机器学习模型中取得了最优的性能,其预测值与真实值比较的R²值为0.97,RMSE仅为0.038。因此,本研究为预测香菇帽的关键性状提供了指导。
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来源期刊
Frontiers in Plant Science
Frontiers in Plant Science PLANT SCIENCES-
CiteScore
7.30
自引率
14.30%
发文量
4844
审稿时长
14 weeks
期刊介绍: In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches. Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.
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