Molecular basis of promiscuous chemokine binding and structural mimicry at the C-X-C chemokine receptor, CXCR2

IF 14.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Cell Pub Date : 2025-02-19 DOI:10.1016/j.molcel.2025.01.024
Shirsha Saha, Fumiya K. Sano, Saloni Sharma, Manisankar Ganguly, Sudha Mishra, Annu Dalal, Hiroaki Akasaka, Takaaki A. Kobayashi, Nashrah Zaidi, Divyanshu Tiwari, Nabarun Roy, Manish K. Yadav, Nilanjana Banerjee, Sayantan Saha, Samanwita Mohapatra, Yuzuru Itoh, Andy Chevigné, Ramanuj Banerjee, Wataru Shihoya, Osamu Nureki, Arun K. Shukla
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Abstract

Selectivity of natural agonists for their cognate receptors is a hallmark of G-protein-coupled receptors (GPCRs); however, this selectivity often breaks down at the chemokine receptors. Chemokines often display promiscuous binding to chemokine receptors, but the underlying molecular determinants remain mostly elusive. Here, we perform a comprehensive transducer-coupling analysis, testing all known C-X-C chemokines on every C-X-C type chemokine receptor to generate a global fingerprint of the selectivity and promiscuity encoded within this system. Taking lead from this, we determine cryoelectron microscopy (cryo-EM) structures of the most promiscuous receptor, C-X-C chemokine receptor 2 (CXCR2), in complex with several chemokines. These structural snapshots elucidate the details of ligand-receptor interactions, including structural motifs, which are validated using mutagenesis and functional experiments. We also observe that most chemokines position themselves on CXCR2 as a dimer while CXCL6 exhibits a monomeric binding pose. Taken together, our findings provide the molecular basis of chemokine promiscuity at CXCR2 with potential implications for developing therapeutic molecules.

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天然激动剂对其同源受体的选择性是 G 蛋白偶联受体(GPCR)的一大特点;然而,这种选择性在趋化因子受体上却经常被打破。趋化因子通常会与趋化因子受体发生杂乱的结合,但其潜在的分子决定因素大多仍然难以捉摸。在这里,我们对所有已知的 C-X-C 型趋化因子与每种 C-X-C 型趋化因子受体进行了全面的转导偶联分析,以生成该系统内编码的选择性和杂合性的全球指纹。在此基础上,我们确定了杂合性最强的受体--C-X-C 趋化因子受体 2(CXCR2)与几种趋化因子复合物的冷冻电镜(cryo-EM)结构。这些结构快照阐明了配体-受体相互作用的细节,包括结构基团,并通过诱变和功能实验进行了验证。我们还观察到,大多数趋化因子在 CXCR2 上的定位是二聚体,而 CXCL6 则表现出单体结合的姿态。总之,我们的研究结果为趋化因子在 CXCR2 上的杂合性提供了分子基础,对开发治疗分子具有潜在的意义。
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来源期刊
Molecular Cell
Molecular Cell 生物-生化与分子生物学
CiteScore
26.00
自引率
3.80%
发文量
389
审稿时长
1 months
期刊介绍: Molecular Cell is a companion to Cell, the leading journal of biology and the highest-impact journal in the world. Launched in December 1997 and published monthly. Molecular Cell is dedicated to publishing cutting-edge research in molecular biology, focusing on fundamental cellular processes. The journal encompasses a wide range of topics, including DNA replication, recombination, and repair; Chromatin biology and genome organization; Transcription; RNA processing and decay; Non-coding RNA function; Translation; Protein folding, modification, and quality control; Signal transduction pathways; Cell cycle and checkpoints; Cell death; Autophagy; Metabolism.
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