Sung Kyung Han, Tae-Im Heo, Byeong-Joo Park, Sung-Hyuk Park, Sang Hoon Che
{"title":"Complete chloroplast genome sequence of Gypsophila pacifica Kom. (Caryophyllaceae)","authors":"Sung Kyung Han, Tae-Im Heo, Byeong-Joo Park, Sung-Hyuk Park, Sang Hoon Che","doi":"10.1016/j.japb.2024.11.001","DOIUrl":null,"url":null,"abstract":"<div><div><em>Gypsophila pacifica</em> Kom. (1916) is a perennial herb native to Korea, China, and Russia, known for its ornamental and medicinal value. However, our understanding of its genomic information remains inadequate. In this study, we determined its complete chloroplast genome (cp) sequence. The cp genome of <em>G. pacifica</em> is 152,827 base pairs (bp) long with a guanine-cytosine content of 36.4%. It consists of a large single-copy region of 83,850 bp, a small single-copy region of 17,329 bp, and two inverted repeat regions of 25,824 bp each. A total of 130 genes were identified in the genome, including 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The maximum likelihood phylogenetic analysis revealed that <em>G. pacifica</em> belongs to the <em>Gypsophila</em> group and is closely related to <em>Dianthus</em> within the tribe Caryophylleae.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 1","pages":"Pages 204-209"},"PeriodicalIF":0.6000,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Asia-Pacific Biodiversity","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2287884X2400164X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
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Abstract
Gypsophila pacifica Kom. (1916) is a perennial herb native to Korea, China, and Russia, known for its ornamental and medicinal value. However, our understanding of its genomic information remains inadequate. In this study, we determined its complete chloroplast genome (cp) sequence. The cp genome of G. pacifica is 152,827 base pairs (bp) long with a guanine-cytosine content of 36.4%. It consists of a large single-copy region of 83,850 bp, a small single-copy region of 17,329 bp, and two inverted repeat regions of 25,824 bp each. A total of 130 genes were identified in the genome, including 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The maximum likelihood phylogenetic analysis revealed that G. pacifica belongs to the Gypsophila group and is closely related to Dianthus within the tribe Caryophylleae.
期刊介绍：
The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.
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