ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection

IF 2.4 4区计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING SoftwareX Pub Date : 2025-05-01 Epub Date: 2025-02-21 DOI:10.1016/j.softx.2025.102105

Sasidhar Malladi , Peter J. Bonney , Sylvia Wanzala Martin , Amos Ssematimba , Kaitlyn M. St. Charles , Kathleen C. O'Hara , Marta D. Remmenga , Michelle Leonard , Holden C. Hutchinson , Cesar A. Corzo , Marie R. Culhane

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Abstract

African Swine Fever (ASF) is a deadly, viral, swine disease with serious socio-economic impacts across the globe. Developing effective active surveillance strategies is critical, given the relatively long herd level incubation period for ASF. We developed an interactive web application that interfaces with a heterogeneous within-herd disease transmission model and enables rapid exploration of various ASF transmission scenarios and premovement surveillance options for finisher swine herds. The application demonstrates the effects of various surveillance design aspects and illustrates the benefit of an enhanced targeted biosecurity interval before movement. Developing such interactive tools can help translate complex mathematical models, and advance communication of ASF risk and surveillance strategies.

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ASF Shiny应用程序：一个交互式web应用程序，用于探索早期非洲猪瘟检测的移动前主动监测场景

非洲猪瘟（ASF）是一种致命的病毒性猪瘟，在全球范围内具有严重的社会经济影响。鉴于非洲猪瘟的群体潜伏期相对较长，制定有效的主动监测战略至关重要。我们开发了一个交互式web应用程序，该应用程序与异质群内疾病传播模型接口，能够快速探索各种非洲猪瘟传播场景和育肥猪群的移动前监测选项。该应用程序演示了各种监视设计方面的效果，并说明了在移动之前增强目标生物安全间隔的好处。开发这种互动工具可以帮助翻译复杂的数学模型，并促进非洲猪瘟风险和监测战略的交流。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

SoftwareX COMPUTER SCIENCE, SOFTWARE ENGINEERING-

CiteScore

5.50

自引率

2.90%

发文量

184

审稿时长

9 weeks

期刊介绍： SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.