{"title":"Foldameric receptors with domain-swapping cavities capable of selectively binding and transporting monosaccharides†","authors":"Geunmoo Song , Seungwon Lee , Kyu-Sung Jeong","doi":"10.1039/d4ob02061h","DOIUrl":null,"url":null,"abstract":"<div><div>The development of synthetic receptors capable of selectively binding and transporting saccharides is crucial but highly challenging. In this study, two foldameric receptors and , consisting of two repeating monomers, indolocarbazole and naphthyridine units, with different aromatic spacers in the middle of their sequences, have been synthesised. These receptors fold into helical conformations, and the two strands of each receptor are assembled to create domain-swapping cavities for binding monosaccharides by multiple hydrogen bonds. According to <sup>1</sup>H NMR, CD spectroscopy, mass spectrometry, and ITC experiments, receptor forms two distinct 2 : 2 complexes with methyl β-<span>d</span>-galactopyranoside and methyl β-<span>d</span>-glucopyranoside: (-<em>MM</em>)<sub>2</sub>⊃(methyl β-<span>d</span>-galactopyranoside·2H<sub>2</sub>O)<sub>2</sub> and (-<em>MP</em>)<sub>2</sub>⊃(methyl β-<span>d</span>-glucopyranoside)<sub>2</sub>. Despite being composed of identical foldamer strands, these two complexes exhibit notably different folding and assembly modes to achieve optimal stability. The binding affinities of for methyl β-<span>d</span>-galactopyranoside and methyl β-<span>d</span>-glucopyranoside are estimated to be log <em>K</em> = 12.7 and 13.3, respectively, in 5% (v/v) DMSO/CH<sub>2</sub>Cl<sub>2</sub>. On the other hand, receptor forms a stable 2 : 2 receptor/guest complex with methyl β-<span>d</span>-glucopyranoside, (-<em>MP</em>)<sub>2</sub>⊃(methyl β-<span>d</span>-glucopyranoside)<sub>2</sub>, with an association constant of log <em>K</em> = 13.9, which is significantly higher than that of methyl β-<span>d</span>-galactopyranoside (log <em>K</em> = 11.1) and methyl α-<span>d</span>-glucopyranoside (log <em>K</em> = 10.6). Furthermore, receptor facilitates the selective transport of methyl β-<span>d</span>-glucopyranoside over other glycosides across an organic phase (CH<sub>2</sub>Cl<sub>2</sub>) in U-tube experiments.</div></div>","PeriodicalId":96,"journal":{"name":"Organic & Biomolecular Chemistry","volume":"23 12","pages":"Pages 2845-2853"},"PeriodicalIF":2.7000,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/ob/d4ob02061h?page=search","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Organic & Biomolecular Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S1477052025001338","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/17 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
引用次数: 0
Abstract
The development of synthetic receptors capable of selectively binding and transporting saccharides is crucial but highly challenging. In this study, two foldameric receptors and , consisting of two repeating monomers, indolocarbazole and naphthyridine units, with different aromatic spacers in the middle of their sequences, have been synthesised. These receptors fold into helical conformations, and the two strands of each receptor are assembled to create domain-swapping cavities for binding monosaccharides by multiple hydrogen bonds. According to 1H NMR, CD spectroscopy, mass spectrometry, and ITC experiments, receptor forms two distinct 2 : 2 complexes with methyl β-d-galactopyranoside and methyl β-d-glucopyranoside: (-MM)2⊃(methyl β-d-galactopyranoside·2H2O)2 and (-MP)2⊃(methyl β-d-glucopyranoside)2. Despite being composed of identical foldamer strands, these two complexes exhibit notably different folding and assembly modes to achieve optimal stability. The binding affinities of for methyl β-d-galactopyranoside and methyl β-d-glucopyranoside are estimated to be log K = 12.7 and 13.3, respectively, in 5% (v/v) DMSO/CH2Cl2. On the other hand, receptor forms a stable 2 : 2 receptor/guest complex with methyl β-d-glucopyranoside, (-MP)2⊃(methyl β-d-glucopyranoside)2, with an association constant of log K = 13.9, which is significantly higher than that of methyl β-d-galactopyranoside (log K = 11.1) and methyl α-d-glucopyranoside (log K = 10.6). Furthermore, receptor facilitates the selective transport of methyl β-d-glucopyranoside over other glycosides across an organic phase (CH2Cl2) in U-tube experiments.
能够选择性结合和运输糖类的合成受体的开发是至关重要的,但也是极具挑战性的。在本研究中,合成了由吲哚咔唑和萘啶两个重复单体组成的两个foldameric受体1和2,它们的序列中间有不同的芳香间隔。这些受体折叠成螺旋状构象,每个受体的两条链组装在一起,形成区域交换腔,通过多个氢键结合单糖。根据1H NMR, CD光谱,质谱和ITC实验,受体1与甲基β- d -半乳糖吡喃苷和甲基β- d -葡萄糖吡喃苷形成两个不同的2:1配合物:(1- mm)2、(甲基β- d -半乳糖吡喃苷·2H2O)2和(1- mp)2、(甲基β- d -葡萄糖吡喃苷)2。尽管由相同的折叠体链组成,这两种配合物表现出明显不同的折叠和组装模式,以达到最佳的稳定性。在5% (v/v) DMSO/CH2Cl2中,1对甲基β- d -半乳糖吡喃苷和甲基β- d -葡萄糖吡喃苷的结合亲和估计分别为log K = 12.7和13.3。另一方面,受体2与甲基β- d -葡萄糖苷、(2- mp)2、(甲基β- d -葡萄糖苷)2形成稳定的2:2受体/客体复合物,其关联常数为log K = 13.9,显著高于甲基β- d -半乳糖糖苷(log K = 11.1)和甲基α- d -葡萄糖苷(log K = 10.6)。此外,在u型管实验中,受体2促进甲基β- d - glucopyrano苷在有机相(CH2Cl2)上的选择性转运。
期刊介绍:
Organic & Biomolecular Chemistry is an international journal using integrated research in chemistry-organic chemistry. Founded in 2003 by the Royal Society of Chemistry, the journal is published in Semimonthly issues and has been indexed by SCIE, a leading international database. The journal focuses on the key research and cutting-edge progress in the field of chemistry-organic chemistry, publishes and reports the research results in this field in a timely manner, and is committed to becoming a window and platform for rapid academic exchanges among peers in this field. The journal's impact factor in 2023 is 2.9, and its CiteScore is 5.5.