Shape parameters of evolutionary trees in theoretical computer science.

IF 4.7 2区 生物学 Q1 BIOLOGY Philosophical Transactions of the Royal Society B: Biological Sciences Pub Date : 2025-02-13 Epub Date: 2025-02-20 DOI:10.1098/rstb.2023.0304
Michael Fuchs
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Abstract

Shape parameters, e.g. balance indices, of evolutionary trees have been extensively studied under the Yule model in phylogenetics. Independently, many of the same parameters have also been studied for random binary search trees in computer science, where they measure the running time of algorithms. In fact, under the Yule and binary search tree models, these parameters have the same distribution, resulting in many identical discoveries. In this survey, we explain these connections and introduce some of the tools that have been used in computer science to derive stochastic results for shape parameters.This article is part of the theme issue '"A mathematical theory of evolution": phylogenetic models dating back 100 years'.

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理论计算机科学中进化树的形状参数。
在系统发育学的Yule模型下,进化树的形状参数(如平衡指数)得到了广泛的研究。在计算机科学中,许多相同的参数也被研究用于随机二叉搜索树,它们测量算法的运行时间。事实上,在Yule和二叉搜索树模型下,这些参数具有相同的分布,导致许多相同的发现。在本调查中,我们解释了这些联系,并介绍了一些在计算机科学中用于导出形状参数随机结果的工具。这篇文章是主题“进化的数学理论”的一部分:追溯到100年前的系统发育模型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
11.80
自引率
1.60%
发文量
365
审稿时长
3 months
期刊介绍: The journal publishes topics across the life sciences. As long as the core subject lies within the biological sciences, some issues may also include content crossing into other areas such as the physical sciences, social sciences, biophysics, policy, economics etc. Issues generally sit within four broad areas (although many issues sit across these areas): Organismal, environmental and evolutionary biology Neuroscience and cognition Cellular, molecular and developmental biology Health and disease.
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