Enhanced in silico QSAR-based screening of butyrylcholinesterase inhibitors using multi-feature selection and machine learning.

IF 2.3 3区 环境科学与生态学 Q3 CHEMISTRY, MULTIDISCIPLINARY SAR and QSAR in Environmental Research Pub Date : 2025-02-01 Epub Date: 2025-02-21 DOI:10.1080/1062936X.2025.2466020
D Sharmistha, M Prabha, R R Siva Kiran, H Ashoka
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Abstract

Butyrylcholinesterase inhibition offers one of the formulated solutions to tackle the aggravating symptoms of dementia that downgrades to cholinergic neuronal loss in Alzheimer's disease. We developed a QSAR model to facilitate the identification of effective butyrylcholinesterase inhibitors. The model employs multi-feature selection and feature learning, improving the in silico screening efficiency and accelerating drug discovery efforts. This study aims to integrate Human Intestinal Absorption (HIA) values of butyrylcholinesterase (BChE) target inhibitors and their 50% inhibitory concentration (IC50) with machine learning tools. The model was developed using chemical descriptors in combination with supervised machine learning classification algorithms. Random Forest Classifier algorithm proved to be the ultimate best fit for classification model metrics including log loss probability (0.04225), accuracy score (98.88%) and Matthew's correlation coefficient (0.98). Furthermore, a subset of the active dataset was used to study the regression based on HIA values using multi-feature selection and feature learning. The models were validated using precision, recall and F1 score for regression modelling. After integrating HIA data with existing machine learning algorithms, we observed a significant reduction of 89.63% in the number of inhibitors. The findings provide valuable pharmacological insights that can help in future design of drug development schemes different from conventional methods.

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利用多特征选择和机器学习增强基于硅qsar的丁基胆碱酯酶抑制剂筛选。
丁酰胆碱酯酶抑制提供了一个制定的解决方案,以解决老年痴呆症的恶化症状,降低到胆碱能神经元丧失在阿尔茨海默病。我们开发了一个QSAR模型,以促进识别有效的丁基胆碱酯酶抑制剂。该模型采用多特征选择和特征学习,提高了计算机筛选效率,加快了药物发现速度。本研究旨在利用机器学习工具整合丁基胆碱酯酶(BChE)靶点抑制剂的人体肠道吸收(HIA)值及其50%抑制浓度(IC50)。该模型是使用化学描述符结合监督机器学习分类算法开发的。结果表明,随机森林分类器算法对对数损失概率(0.04225)、准确率分数(98.88%)和马修相关系数(0.98)等分类模型指标的拟合效果最佳。此外,利用活动数据集的一个子集,利用多特征选择和特征学习,研究基于HIA值的回归。使用回归模型的精度、召回率和F1评分对模型进行验证。将HIA数据与现有的机器学习算法相结合后,我们发现抑制剂的数量显著减少了89.63%。这些发现提供了有价值的药理学见解,可以帮助未来设计不同于传统方法的药物开发方案。
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来源期刊
CiteScore
5.20
自引率
20.00%
发文量
78
审稿时长
>24 weeks
期刊介绍: SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.
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