Geometric Self-Supervised Learning: A Novel AI Approach Towards Quantitative and Explainable Diabetic Retinopathy Detection.

IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Bioengineering Pub Date : 2025-02-06 DOI:10.3390/bioengineering12020157
Lucas Pu, Oliver Beale, Xin Meng
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引用次数: 0

Abstract

Background: Diabetic retinopathy (DR) is the leading cause of blindness among working-age adults. Early detection is crucial to reducing DR-related vision loss risk but is fraught with challenges. Manual detection is labor-intensive and often misses tiny DR lesions, necessitating automated detection.

Objective: We aimed to develop and validate an annotation-free deep learning strategy for the automatic detection of exudates and bleeding spots on color fundus photography (CFP) images and ultrawide field (UWF) retinal images.

Materials and methods: Three cohorts were created: two CFP cohorts (Kaggle-CFP and E-Ophtha) and one UWF cohort. Kaggle-CFP was used for algorithm development, while E-Ophtha, with manually annotated DR-related lesions, served as the independent test set. For additional independent testing, 50 DR-positive cases from both the Kaggle-CFP and UWF cohorts were manually outlined for bleeding and exudate spots. The remaining cases were used for algorithm training. A multiscale contrast-based shape descriptor transformed DR-verified retinal images into contrast fields. High-contrast regions were identified, and local image patches from abnormal and normal areas were extracted to train a U-Net model. Model performance was evaluated using sensitivity and false positive rates based on manual annotations in the independent test sets.

Results: Our trained model on the independent CFP cohort achieved high sensitivities for detecting and segmenting DR lesions: microaneurysms (91.5%, 9.04 false positives per image), hemorrhages (92.6%, 2.26 false positives per image), hard exudates (92.3%, 7.72 false positives per image), and soft exudates (90.7%, 0.18 false positives per image). For UWF images, the model's performance varied by lesion size. Bleeding detection sensitivity increased with lesion size, from 41.9% (6.48 false positives per image) for the smallest spots to 93.4% (5.80 false positives per image) for the largest. Exudate detection showed high sensitivity across all sizes, ranging from 86.9% (24.94 false positives per image) to 96.2% (6.40 false positives per image), though false positive rates were higher for smaller lesions.

Conclusions: Our experiments demonstrate the feasibility of training a deep learning neural network for detecting and segmenting DR-related lesions without relying on their manual annotations.

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几何自监督学习:一种新的人工智能方法,用于定量和可解释的糖尿病视网膜病变检测。
背景:糖尿病视网膜病变(DR)是导致工作年龄成年人失明的主要原因。早期发现对于降低dr相关的视力丧失风险至关重要,但也充满了挑战。人工检测是劳动密集型的,经常遗漏微小的DR病变,需要自动检测。目的:我们旨在开发和验证一种无注释的深度学习策略,用于彩色眼底摄影(CFP)图像和超宽视场(UWF)视网膜图像上渗出物和出血点的自动检测。材料和方法:创建了三个队列:两个CFP队列(Kaggle-CFP和E-Ophtha)和一个UWF队列。算法开发采用Kaggle-CFP,而人工标注dr相关病变的E-Ophtha作为独立测试集。为了进行额外的独立检测,从Kaggle-CFP和UWF队列中手动勾画出50例dr阳性病例的出血和渗出点。剩余的案例用于算法训练。基于多尺度对比度的形状描述符将dr验证的视网膜图像转换为对比度场。识别高对比度区域,提取异常区域和正常区域的局部图像块,训练U-Net模型。在独立测试集中使用基于手动注释的灵敏度和误报率来评估模型性能。结果:我们在独立CFP队列上训练的模型在检测和分割DR病变方面具有很高的灵敏度:微动脉瘤(91.5%,每张图像9.04个假阳性)、出血(92.6%,每张图像2.26个假阳性)、硬渗出物(92.3%,每张图像7.72个假阳性)和软渗出物(90.7%,每张图像0.18个假阳性)。对于UWF图像,模型的性能随病变大小而变化。出血检测灵敏度随病变大小而增加,从最小斑点的41.9%(每张图像6.48个假阳性)到最大斑点的93.4%(每张图像5.80个假阳性)。渗出液检测在所有大小的病变中都显示出高灵敏度,范围从86.9%(每张图像24.94个假阳性)到96.2%(每张图像6.40个假阳性),尽管小病变的假阳性率更高。结论:我们的实验证明了训练一个深度学习神经网络来检测和分割dr相关病变的可行性,而不依赖于它们的手动注释。
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来源期刊
Bioengineering
Bioengineering Chemical Engineering-Bioengineering
CiteScore
4.00
自引率
8.70%
发文量
661
期刊介绍: Aims Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal: ● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings. ● Manuscripts regarding research proposals and research ideas will be particularly welcomed. ● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material. ● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds. Scope ● Bionics and biological cybernetics: implantology; bio–abio interfaces ● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices ● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc. ● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology ● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering ● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation ● Translational bioengineering
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