Correction to “Predicting and Understanding Noncovalent Interactions Using Novel Forms of Symmetry-Adapted Perturbation Theory”

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2025-03-02 DOI:10.1021/acs.accounts.5c00107
Kevin Carter-Fenk, Ka Un Lao, John M. Herbert
{"title":"Correction to “Predicting and Understanding Noncovalent Interactions Using Novel Forms of Symmetry-Adapted Perturbation Theory”","authors":"Kevin Carter-Fenk, Ka Un Lao, John M. Herbert","doi":"10.1021/acs.accounts.5c00107","DOIUrl":null,"url":null,"abstract":"In a previous Account, (1) we surveyed the use of extended symmetry-adapted perturbation theory (XSAPT), a family of methods for computing accurate intermolecular interaction energies and components thereof. In considering π-stacking interactions, we made comparisons between the XSAPT + many-body dispersion (MBD) method and a model potential introduced in a seminal paper on π–π interactions by Hunter and Sanders (HS). (2) Unfortunately, our implementation of the HS model contained an error in the van der Waals (vdW) term, which is corrected here alongside some additional clarifications. Because there are subtleties in how the vdW parameters were originally reported, (2) as well as ambiguity regarding which point charges constitute the HS model, (2,3) additional details are provided here. The HS model consists of a point-charge electrostatic term (<i>E</i><sub>elst</sub><sup>Q</sup>) and a vdW term (<i>E</i><sub>vdW</sub>), There is some ambiguity regarding the point charges to be used in <i>E</i><sub>elst</sub><sup>Q</sup>. What is clear is that the HS model contains atom-centered point charges for carbon atoms within the π-system (<i>q</i><sub>C</sub>) along with out-of-plane displaced charges (<i>q</i><sub>π</sub>) to represent the π-electrons. In their original 1990 paper, HS first discuss “unpolarized” or “idealized” charges, in which carbon atoms within the π-system are described by charges <i>q</i><sub>C</sub> = +1.0 and <i>q</i><sub>π</sub> = −0.5 (in atomic units). (2) The π charges are displaced from the nuclei by δ = 0.47 Å, both above and below the arene plane, a value that is determined in order to reproduce the experimental quadrupole moment of C<sub>6</sub>H<sub>6</sub>. (5) Although the HS paper includes a discussion of polarizing this idealized framework, no actual values for hydrogen-atom charges are provided in ref (2). Moreover, Figure 3 of ref (2) depicts only <i>q</i><sub>C</sub> = +1.0 and <i>q</i><sub>π</sub> = −0.5, with no indication that there are charges on the hydrogen atoms. In 1991, Hunter et al. (3) suggested a model in which the charge on carbon is reduced to <i>q</i><sub>C</sub> = +0.95 and a charge <i>q</i><sub>H</sub> = +0.05 is placed on hydrogen, retaining <i>q</i><sub>π</sub> = −0.5. This scheme (in Figure 3 of ref (3)) is attributed to the original HS model even though the value of <i>q</i><sub>H</sub> was not provided in the original. In other work by Hunter and co-workers, only <i>q</i><sub>C</sub> and <i>q</i><sub>π</sub> are discussed, e.g., in Figure 3 of ref (6). These ambiguities are consistent with widespread confusion in the literature regarding what the HS model actually is, as discussed elsewhere. (7) For this Correction, we implemented <i>E</i><sub>elst</sub><sup>Q</sup> according to ref (3) using <i>q</i><sub>C</sub> = +0.95, <i>q</i><sub>H</sub> = +0.05, and <i>q</i><sub>π</sub> = −0.5. For (C<sub>6</sub>H<sub>6</sub>)<sub>2</sub>, the presence or absence of <i>q</i><sub>H</sub> makes only a minor difference. Using the corrected parameters in <i>E</i><sub>vdW</sub> and the updated parameters in <i>E</i><sub>elst</sub><sup>Q</sup>, we recomputed HS potentials for the lateral displacement of parallel and perpendicular arrangements of the benzene dimer. Figure 1 of this Correction should replace Figure 8 in ref (1), illustrating how <i>E</i><sub>HS</sub> and <i>E</i><sub>elst</sub><sup>Q</sup> vary with lateral displacement. Note that the electrostatic component (Figure 1b) remains qualitatively incorrect in comparison to a calculation based on full monomer charge densities, the latter of which can be found in Figure 9 of ref (1). The crux of our argument is unchanged, namely, that electrostatics does not explain parallel-displaced π-stacking. Figure 1. (a) Total HS model potential and (b) its electrostatic component, for lateral displacement of (C<sub>6</sub>H<sub>6</sub>)<sub>2</sub> in either a coplanar configuration at 3.4 Å separation (consistent with the parallel-displaced minimum-energy geometry) or else a perpendicular edge-to-face arrangement with a 5.0 Å center-to-center distance, consistent with the T-shaped saddle point of (C<sub>6</sub>H<sub>6</sub>)<sub>2</sub>. This figure should replace Figure 8 of ref (1). Figure 2 of this Correction plots <i>E</i><sub>HS</sub> and <i>E</i><sub>elst</sub><sup>Q</sup> for lateral displacement of benzene atop a C<sub>96</sub>H<sub>24</sub> graphene nanoflake; this figure should replace Figure 12a of ref (1). As compared to XSAPT + MBD calculations (in Figure 12c of ref (1)), the corrected version of the HS model potential is qualitatively correct insofar as the zero-displacement structure is a saddle point between symmetry-equivalent minima corresponding to parallel-displaced π-stacking. Nevertheless, the electrostatic component <i>E</i><sub>elst</sub><sup>Q</sup> (Figure 2b of this Correction) is repulsive at all values of the lateral displacement coordinate, which is not consistent with exact electrostatics. (8) Indeed, a central aspect of our “pizza-π” model of π–π interactions, (8) which explains how π-stacking is different from ordinary dispersion, is that electrostatics is attractive for two coplanar arenes separated by typical π-stacking distances of 3.4–3.8 Å. This conclusion is borne out in a wide variety of π–π interactions. (7−11) Figure 2. (a) Total HS model potential and (b) its electrostatic component, for lateral displacement of C<sub>6</sub>H<sub>6</sub> atop C<sub>96</sub>H<sub>24</sub> in a cofacial configuration at 3.4 Å separation. This figure should replace Figure 12a of ref (1). A final topic of discussion is the use of δ<sup>±</sup> to label the cartoons in Figure 6 of ref (1). This is potentially misleading, as it may suggest that C<sub>6</sub>F<sub>6</sub> has a positive charge density on its π faces, which is absurd. Rather, these diagrams are intended to convey the change in <i>quadrupolar</i> electrostatics that occurs when one C<sub>6</sub>H<sub>6</sub> monomer is replaced by C<sub>6</sub>F<sub>6</sub>, since the quadrupole–quadrupole interactions in (C<sub>6</sub>H<sub>6</sub>)···(C<sub>6</sub>F<sub>6</sub>) are attractive in the face-to-face orientation. A similar diagram, coloring C<sub>6</sub>F<sub>6</sub> opposite to C<sub>6</sub>H<sub>6</sub>, can be found in Hunter et al. (6) Although these cartoon charge distributions are widely used in discussing π-stacking, (6,12,13) we have elsewhere suggested that they are misleading and that their use ought to be discontinued. (7) We thank Prof. Steven Wheeler (University of Georgia) for bringing these issues to our attention based on his independent implementation of the HS model. This article references 13 other publications. 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引用次数: 0

Abstract

In a previous Account, (1) we surveyed the use of extended symmetry-adapted perturbation theory (XSAPT), a family of methods for computing accurate intermolecular interaction energies and components thereof. In considering π-stacking interactions, we made comparisons between the XSAPT + many-body dispersion (MBD) method and a model potential introduced in a seminal paper on π–π interactions by Hunter and Sanders (HS). (2) Unfortunately, our implementation of the HS model contained an error in the van der Waals (vdW) term, which is corrected here alongside some additional clarifications. Because there are subtleties in how the vdW parameters were originally reported, (2) as well as ambiguity regarding which point charges constitute the HS model, (2,3) additional details are provided here. The HS model consists of a point-charge electrostatic term (EelstQ) and a vdW term (EvdW), There is some ambiguity regarding the point charges to be used in EelstQ. What is clear is that the HS model contains atom-centered point charges for carbon atoms within the π-system (qC) along with out-of-plane displaced charges (qπ) to represent the π-electrons. In their original 1990 paper, HS first discuss “unpolarized” or “idealized” charges, in which carbon atoms within the π-system are described by charges qC = +1.0 and qπ = −0.5 (in atomic units). (2) The π charges are displaced from the nuclei by δ = 0.47 Å, both above and below the arene plane, a value that is determined in order to reproduce the experimental quadrupole moment of C6H6. (5) Although the HS paper includes a discussion of polarizing this idealized framework, no actual values for hydrogen-atom charges are provided in ref (2). Moreover, Figure 3 of ref (2) depicts only qC = +1.0 and qπ = −0.5, with no indication that there are charges on the hydrogen atoms. In 1991, Hunter et al. (3) suggested a model in which the charge on carbon is reduced to qC = +0.95 and a charge qH = +0.05 is placed on hydrogen, retaining qπ = −0.5. This scheme (in Figure 3 of ref (3)) is attributed to the original HS model even though the value of qH was not provided in the original. In other work by Hunter and co-workers, only qC and qπ are discussed, e.g., in Figure 3 of ref (6). These ambiguities are consistent with widespread confusion in the literature regarding what the HS model actually is, as discussed elsewhere. (7) For this Correction, we implemented EelstQ according to ref (3) using qC = +0.95, qH = +0.05, and qπ = −0.5. For (C6H6)2, the presence or absence of qH makes only a minor difference. Using the corrected parameters in EvdW and the updated parameters in EelstQ, we recomputed HS potentials for the lateral displacement of parallel and perpendicular arrangements of the benzene dimer. Figure 1 of this Correction should replace Figure 8 in ref (1), illustrating how EHS and EelstQ vary with lateral displacement. Note that the electrostatic component (Figure 1b) remains qualitatively incorrect in comparison to a calculation based on full monomer charge densities, the latter of which can be found in Figure 9 of ref (1). The crux of our argument is unchanged, namely, that electrostatics does not explain parallel-displaced π-stacking. Figure 1. (a) Total HS model potential and (b) its electrostatic component, for lateral displacement of (C6H6)2 in either a coplanar configuration at 3.4 Å separation (consistent with the parallel-displaced minimum-energy geometry) or else a perpendicular edge-to-face arrangement with a 5.0 Å center-to-center distance, consistent with the T-shaped saddle point of (C6H6)2. This figure should replace Figure 8 of ref (1). Figure 2 of this Correction plots EHS and EelstQ for lateral displacement of benzene atop a C96H24 graphene nanoflake; this figure should replace Figure 12a of ref (1). As compared to XSAPT + MBD calculations (in Figure 12c of ref (1)), the corrected version of the HS model potential is qualitatively correct insofar as the zero-displacement structure is a saddle point between symmetry-equivalent minima corresponding to parallel-displaced π-stacking. Nevertheless, the electrostatic component EelstQ (Figure 2b of this Correction) is repulsive at all values of the lateral displacement coordinate, which is not consistent with exact electrostatics. (8) Indeed, a central aspect of our “pizza-π” model of π–π interactions, (8) which explains how π-stacking is different from ordinary dispersion, is that electrostatics is attractive for two coplanar arenes separated by typical π-stacking distances of 3.4–3.8 Å. This conclusion is borne out in a wide variety of π–π interactions. (7−11) Figure 2. (a) Total HS model potential and (b) its electrostatic component, for lateral displacement of C6H6 atop C96H24 in a cofacial configuration at 3.4 Å separation. This figure should replace Figure 12a of ref (1). A final topic of discussion is the use of δ± to label the cartoons in Figure 6 of ref (1). This is potentially misleading, as it may suggest that C6F6 has a positive charge density on its π faces, which is absurd. Rather, these diagrams are intended to convey the change in quadrupolar electrostatics that occurs when one C6H6 monomer is replaced by C6F6, since the quadrupole–quadrupole interactions in (C6H6)···(C6F6) are attractive in the face-to-face orientation. A similar diagram, coloring C6F6 opposite to C6H6, can be found in Hunter et al. (6) Although these cartoon charge distributions are widely used in discussing π-stacking, (6,12,13) we have elsewhere suggested that they are misleading and that their use ought to be discontinued. (7) We thank Prof. Steven Wheeler (University of Georgia) for bringing these issues to our attention based on his independent implementation of the HS model. This article references 13 other publications. This article has not yet been cited by other publications.

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在之前的一篇论文(1)中,我们研究了扩展对称适配扰动理论(XSAPT)的应用,该理论是计算精确分子间相互作用能量及其分量的一系列方法。在考虑π堆积相互作用时,我们比较了 XSAPT + 多体色散(MBD)方法和亨特与桑德斯(Hunter and Sanders,HS)在关于π-π相互作用的开创性论文中提出的模型势能。 (2) 不幸的是,我们对 HS 模型的实现包含了范德华(vdW)项中的一个错误,在此我们对该错误进行了修正,并做了一些补充说明。由于 vdW 参数最初的报告方式存在微妙之处(2),以及构成 HS 模型的点电荷含糊不清(2,3),在此提供更多细节。HS 模型由一个点电荷静电项(EelstQ)和一个 vdW 项(EvdW)组成。显而易见的是,HS 模型包含π 系统内碳原子的原子中心点电荷(qC)以及代表π 电子的平面外位移电荷(qπ)。在 1990 年的原始论文中,HS 首次讨论了 "非极化 "或 "理想化 "电荷,其中 π 系统中的碳原子用电荷 qC = +1.0 和 qπ = -0.5(原子单位)来描述。(2) π 电荷在炔平面上下与原子核的距离为 δ = 0.47 Å,这个值是为了再现 C6H6 的实验四极矩而确定的。 (5) 虽然 HS 论文讨论了如何极化这个理想化框架,但参考文献 (2) 中没有提供氢原子电荷的实际值。此外,参考文献 (2) 中的图 3 只描述了 qC = +1.0 和 qπ = -0.5,没有说明氢原子上有电荷。1991 年,亨特等人(3)提出了一个模型,其中碳原子上的电荷减少到 qC = +0.95,氢原子上的电荷 qH = +0.05,保留 qπ = -0.5。这一方案(参考文献 (3) 图 3 中)归因于最初的 HS 模型,尽管最初的模型中并没有提供 qH 的值。在 Hunter 及其合作者的其他研究中,只讨论了 qC 和 qπ,如参考文献 (6) 的图 3。这些模棱两可的地方与文献中关于 HS 模型的广泛混淆是一致的,这一点在其他地方也有讨论。(7) 在这次修正中,我们根据参考文献 (3) 使用 qC = +0.95、qH = +0.05、qπ = -0.5 实现了 EelstQ。对于 (C6H6)2,有无 qH 仅有微小差别。利用 EvdW 中的修正参数和 EelstQ 中的更新参数,我们重新计算了苯二聚体平行排列和垂直排列横向位移的 HS 电位。本更正的图 1 应取代参考文献 (1) 中的图 8,说明 EHS 和 EelstQ 如何随横向位移而变化。请注意,与基于全单体电荷密度的计算结果相比,静电成分(图 1b)在本质上仍然是不正确的,后者见参考文献 (1) 的图 9。我们论证的核心没有改变,即静电不能解释平行位移 π 堆积。图 1:(a) HS 模型总电势和(b) 其静电分量,用于(C6H6)2 的横向位移,即 3.4 Å 间距的共面配置(与平行位移最小能量几何形状一致),或 5.0 Å 中心到中心间距的垂直边缘到面排列,与(C6H6)2 的 T 形鞍点一致。此图应取代参考文献 (1) 中的图 8。本更正的图 2 绘制了苯在 C96H24 石墨烯纳米片上横向位移的 EHS 和 EelstQ;该图应取代参考文献 (1) 的图 12a。与 XSAPT + MBD 计算结果(参考文献 (1) 的图 12c)相比,修正版的 HS 模型电势在质量上是正确的,因为零位移结构是平行位移 π 堆积对应的对称等效最小值之间的一个鞍点。然而,静电分量 EelstQ(本更正图 2b)在横向位移坐标的所有值上都是排斥性的,这与精确静电不一致。(8)事实上,我们的π-π相互作用 "披萨π "模型(8)的一个核心内容是,静电对两个共面烷烃具有吸引力,它们之间的典型π-π堆积距离为 3.4-3.8 Å。(7-11) 图 2:(a)HS 模型总电势和(b)其静电分量,用于在 3.4 Å 间距的共面构型中,C6H6 位于 C96H24 上的横向位移。此图应取代参考文献(1)中的图 12a。最后一个讨论主题是使用 δ± 来标注参考文献 (1) 图 6 中的漫画。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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