Theoretical Investigation of the Effect of Intermolecular Interactions on the Spectrum of Doubly Ionized States in Uracil-nH2O (n = 1-4) Systems

IF 1.4 4区 化学 Q4 CHEMISTRY, INORGANIC & NUCLEAR Journal of Structural Chemistry Pub Date : 2025-03-10 DOI:10.1134/S0022476625020039
V. M. Grishkova, O. R. Kritskiy, A. B. Trofimov, A. D. Skitnevskaya
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Abstract

The formation of radical-cation states with vacancies in inner-valence levels upon the effect of ionizing radiation on biological systems can initiate electron-emission relaxation processes. Ionization of the initial molecule with the formation of the dicationic state corresponds to the Auger decay. If molecules of the nearest environment are ionized, then it is the intermolecular Coulombic decay (ICD). Recent studies show that intermolecular interactions, including those with a solvent, are an important factor determining the probability of such relaxation processes and their energy characteristics. DNA and RNA nucleic bases are known to have some amount of water molecules in their nearest environments. In this work, using the equation-of-motion method in the EOM-DIP-CCSD variant, we consider the effect of the number of water molecules and their orientations in uracil complexes (U) U–nH2O, n = 1-4 on the spectrum of dicationic states formed by the described processes. It is shown that the lowest energies of ICD states are due to water coordination to uracil at positions most characteristic of RNA. The energy of states with vacancies on different molecules decreases with increasing number of water molecules from 1 to 3, and then remains invariant. The number of ICD dicationic states increases with increasing number of environment molecules, which indicates the significant role of nonlocal decays in solution.

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分子间相互作用对尿嘧啶- nh2o (n = 1-4)体系双电离态光谱影响的理论研究
在电离辐射作用下,生物系统形成具有内价位空位的自由基-阳离子态,可以引发电子发射弛豫过程。初始分子的电离与指示态的形成对应于俄歇衰变。如果最近环境的分子被电离,那么它就是分子间库仑衰变(ICD)。最近的研究表明,分子间的相互作用,包括与溶剂的相互作用,是决定这种弛豫过程的概率及其能量特征的重要因素。众所周知,DNA和RNA的核碱基在其最近的环境中含有一定量的水分子。在这项工作中,我们使用EOM-DIP-CCSD变体中的运动方程方法,考虑了尿尿素配合物(U) U - nh2o, n = 1-4中水分子数量及其取向对所述过程形成的指示态谱的影响。结果表明,ICD态的最低能量是由于水在RNA最特征的位置与尿嘧啶配位。不同分子上的空位态能量随水分子数从1到3的增加而减小,然后保持不变。随着环境分子数量的增加,ICD指示态的数量增加,这表明溶液中非局部衰变的作用显著。
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来源期刊
Journal of Structural Chemistry
Journal of Structural Chemistry 化学-无机化学与核化学
CiteScore
1.60
自引率
12.50%
发文量
142
审稿时长
8.3 months
期刊介绍: Journal is an interdisciplinary publication covering all aspects of structural chemistry, including the theory of molecular structure and chemical bond; the use of physical methods to study the electronic and spatial structure of chemical species; structural features of liquids, solutions, surfaces, supramolecular systems, nano- and solid materials; and the crystal structure of solids.
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