Deconvolution to restore cryo-EM maps with anisotropic resolution.

Junrui Li, Yifei Chen, Shawn Zheng, Angus McDonald, John W Sedat, David A Agard, Yifan Cheng
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Abstract

With technological advancements in recent years, single particle cryogenic electron microscopy (cryo-EM) has become a major methodology for structural biology. Structure determination by single particle cryo-EM is premised on randomly orientated particles embedded in thin layer of vitreous ice to resolve high-resolution structural information in all directions. Otherwise, preferentially distributed particle orientations will lead to anisotropic resolution of the structure. Here we established a deconvolution approach, named AR-Decon, to computationally improve the quality of three-dimensional maps with anisotropic resolutions reconstructed from datasets with preferred orientations. We have tested and validated the procedure with both synthetic and experimental datasets and compared its performance with alternative machine-learning based methods.

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反卷积恢复各向异性分辨率低温电镜图。
随着近年来技术的进步,单粒子低温电子显微镜(cryo-EM)已成为结构生物学研究的主要方法。单粒子低温电镜的结构测定以嵌入玻璃冰薄层的随机取向粒子为前提,从各个方向解析高分辨率的结构信息。否则,优先分布的粒子取向将导致结构的各向异性分辨率。在这里,我们建立了一种名为AR-Decon的反卷积方法,以计算提高从具有首选方向的数据集重建的各向异性分辨率三维地图的质量。我们已经用合成和实验数据集测试和验证了该过程,并将其性能与其他基于机器学习的方法进行了比较。
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