Theoretical study of the interaction of the potentially toxic contaminants Hg2+, CH3Hg+, CH3CH2Hg+, and C6H5Hg+ with a B3O3 monolayer matrix

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2025-03-18 DOI:10.1007/s00894-025-06339-2
Murielly Fernanda Ribeiro Bihain, Ellane Jacqueline Coelho Moreira Gomes, Anna Karla dos Santos Pereira, Douglas Henrique Pereira
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Abstract

Context

The mercury ion Hg2+, and its derivatives, organomercurials are high toxicity to humans due their ability to bioaccumulate. In view of these problems, studies of the interaction of these potentially toxic compounds with matrices allow verify if they can be detected, or help determine their adsorptive capacity. In this context, the work aims to theoretically evaluate the interaction between the B3O3 matrix and the potentially toxic compounds Hg2+, CH3Hg+, CH3CH2Hg+, and C6H5Hg+. The binding energy values showed that the interaction occurs effectively; being spontaneous and exothermic for all the interactions evaluated. The structural properties demonstrate that mercury interacts with the oxygen atoms of the B3O3 matrix, with bond lengths ranging from 2.365 to 3.777 Å and that all organomercurials form hydrogen bonds. The topological parameters of quantum theory of atoms in molecules (QTAIM) categorized the nature of the interactions in electrostatic for HgO. The non-covalent interaction analyses presented a bluish color, between Hg and matrix oxygen indicating a strong attraction interaction and Van der Waals interactions ( green color) for the interaction of the organic group and B3O3. Thus, it can be confirmed that the study showed that the B3O3 matrix is efficient for the interactions, enabling future experimental studies of the application of this matrix in adsorptive processes or for molecular filters.

Methods

All calculations of density functional theory were performed using the program Gaussian 16 and the structures of B3O3 matrix, Hg2+, CH3Hg+, CH3CH2Hg+, and C6H5Hg+ were generated using the GaussView program. The optimization and vibrational frequency calculations were performed using the functional ωB97XD and 6-31G(d,p) basis set for the H, B, C, and O atoms, while for the Hg atom the basis set used was CEP-31G with compact effective pseudopotential. All analyses were conducted at this level of theory. The quantum theory of atoms in molecules analysis were performed using AIMALL software. Non-covalent interaction calculations were carried out using Multiwfn software, and the structures were visualized using the visual molecular dynamics program.

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潜在毒性污染物Hg2+、CH3Hg+、CH3CH2Hg+和C6H5Hg+与B3O3单层基质相互作用的理论研究
汞离子Hg2+及其衍生物、有机汞由于具有生物蓄积性,对人体具有高毒性。鉴于这些问题,对这些潜在有毒化合物与基质相互作用的研究可以验证它们是否可以被检测到,或者帮助确定它们的吸附能力。在此背景下,本研究旨在从理论上评估B3O3基质与潜在毒性化合物Hg2+、CH3Hg+、CH3CH2Hg+和C6H5Hg+之间的相互作用。结合能值表明相互作用是有效的;所有被评估的相互作用都是自发和放热的。结构性质表明,汞与B3O3基体的氧原子相互作用,键长在2.365 ~ 3.777 Å之间,所有有机聚合物均形成氢键。分子中原子量子理论(QTAIM)的拓扑参数分类了Hg…O静电相互作用的性质。非共价相互作用分析显示,Hg与基质氧之间存在较强的吸引相互作用,而有机基团与B3O3之间存在范德华相互作用(绿色)。因此,可以证实,该研究表明B3O3基质对于相互作用是有效的,为该基质在吸附过程或分子过滤器中的应用的未来实验研究提供了可能。方法采用Gaussian 16程序进行密度泛函理论计算,采用GaussView程序生成B3O3基体、Hg2+、CH3Hg+、CH3CH2Hg+和C6H5Hg+的结构。H、B、C、O原子采用泛函ωB97XD和6-31G(d,p)基集进行优化和振动频率计算,Hg原子采用紧凑有效伪势的CEP-31G基集进行优化和振动频率计算。所有的分析都是在这个理论层面上进行的。用AIMALL软件对分子中原子的量子理论进行了分析。使用Multiwfn软件进行非共价相互作用计算,并使用可视化分子动力学程序对结构进行可视化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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