Identification of the potential role of S1PR1 in adult moyamoya disease based on multiple bioinformatics analysis and experimental verification

IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY The FASEB Journal Pub Date : 2025-03-19 DOI:10.1096/fj.202401445R
Jiabin Zhou, Yu Lei, Shilin Zhang, Renwu Qin, Yuhan Liu, Dongye Yi
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Abstract

Moyamoya disease (MMD) is a chronic occlusive cerebrovascular ailment with a progressively rising incidence, yet its precise etiology and pathogenesis remain elusive. Adult MMD-related datasets GSE189993 and GSE157628 were procured from the GEO database for screening of differentially expressed genes (DEGs). Weighted gene co-expression network analysis (WGCNA) was employed to unveil the most significant module associated with MMD. Least absolute shrinkage and selection operator (LASSO) logistic regression was used to identify and validate diagnostic markers for MMD. CIBERSORT and ssGSEA analyses were conducted to estimate immune cell infiltration in MMD vessels. In vitro experiments were performed to validate the biological functions of Sphingosine-1-phosphate receptor 1 (S1PR1) in mouse aortic smooth muscle cells (MOVAS). A total of 436 DEGs were identified from GSE189993, comprising 202 up-regulated genes and 234 down-regulated genes. Within the green-yellow module, 87 genes overlapped with DEGs, and 6 genes were identified by Cytoscape as key factors in the pathophysiology of MMD, namely, platelet endothelial cell adhesion molecule 1 (PECAM1), von Willebrand factor (VWF), intercellular cell adhesion molecule 1 (ICAM1), vascular endothelial growth factor C (VEGFC), tissue-type plasminogen activator (PLAT), and S1PR1. Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses also showed that key genes were mainly involved in endothelial cells and cell adhesion-related biological function. About 13 diagnostic genes were obtained by the LASSO regression algorithm, with S1PR1 emerging as a hub gene demonstrating good diagnostic performance in both the test set and validation set. Finally, we validated that overexpression of S1PR1 spurred viability, proliferation, and cell division in mouse aortic smooth muscle cells (MOVAS) and human cerebral vascular smooth muscle cells (HCVSMC) by activating the PI3K/AKT signaling pathway. S1PR1 has been identified as a hub gene for MMD. S1PR1 overexpression has been linked to enhanced cell division and proliferation in vitro, suggesting its potential as a therapeutic target for adult MMD.

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基于多重生物信息学分析和实验验证的S1PR1在成人烟雾病中的潜在作用
烟雾病(MMD)是一种发病率逐渐上升的慢性闭塞性脑血管疾病,其确切的病因和发病机制尚不清楚。从GEO数据库中获取成人烟雾病相关数据集GSE189993和GSE157628,用于筛选差异表达基因(DEGs)。加权基因共表达网络分析(WGCNA)揭示了与烟雾病相关的最显著模块。最小绝对收缩和选择算子(LASSO)逻辑回归用于识别和验证烟雾病的诊断标记。通过CIBERSORT和ssGSEA分析来估计MMD血管中的免疫细胞浸润。通过体外实验验证鞘氨醇-1-磷酸受体1 (S1PR1)在小鼠主动脉平滑肌细胞(MOVAS)中的生物学功能。从GSE189993中共鉴定出436个deg,其中上调基因202个,下调基因234个。在绿黄模块中,有87个基因与DEGs重叠,Cytoscape鉴定出6个基因是烟雾病病理生理的关键因子,分别是血小板内皮细胞粘附分子1 (PECAM1)、血管性血血病因子(VWF)、细胞间细胞粘附分子1 (ICAM1)、血管内皮生长因子C (VEGFC)、组织型纤溶酶原激活剂(PLAT)和S1PR1。基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析也表明,关键基因主要参与内皮细胞和细胞粘附相关的生物学功能。LASSO回归算法得到约13个诊断基因,其中S1PR1作为枢纽基因,在测试集和验证集中均表现出较好的诊断性能。最后,我们验证了S1PR1过表达通过激活PI3K/AKT信号通路刺激小鼠主动脉平滑肌细胞(MOVAS)和人脑血管平滑肌细胞(HCVSMC)的活力、增殖和细胞分裂。S1PR1已被确定为烟雾病的枢纽基因。S1PR1过表达与体外细胞分裂和增殖增强有关,这表明它有可能成为成人烟雾病的治疗靶点。
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来源期刊
The FASEB Journal
The FASEB Journal 生物-生化与分子生物学
CiteScore
9.20
自引率
2.10%
发文量
6243
审稿时长
3 months
期刊介绍: The FASEB Journal publishes international, transdisciplinary research covering all fields of biology at every level of organization: atomic, molecular, cell, tissue, organ, organismic and population. While the journal strives to include research that cuts across the biological sciences, it also considers submissions that lie within one field, but may have implications for other fields as well. The journal seeks to publish basic and translational research, but also welcomes reports of pre-clinical and early clinical research. In addition to research, review, and hypothesis submissions, The FASEB Journal also seeks perspectives, commentaries, book reviews, and similar content related to the life sciences in its Up Front section.
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