Practical recommendations for developing software for life science applications.

IF 3.6 3区 生物学 Q3 CELL BIOLOGY Journal of cell science Pub Date : 2025-03-01 Epub Date: 2025-03-17 DOI:10.1242/jcs.263711
Joanna W Pylvänäinen, Guillaume Jacquemet, Stefania Marcotti
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Abstract

Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scientists presents challenges to software adoption. In this Essay, we provide practical recommendations to guide bioimage analysts and developers in creating accessible and usable software for biological research. These recommendations are presented in three phases, covering software design, user involvement in early development stages and the importance of software dissemination. Additionally, two software development case studies are presented to highlight the practical application of these principles, showing how thoughtful development, user-centric design and thorough documentation can bridge the gap between software developers and biologists, fostering wider adoption of the software and enabling further scientific discovery.

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开发生命科学应用软件的实用建议。
开发用户友好型图像分析软件对于推动生物和生命科学研究至关重要。然而,软件开发人员与生命科学家之间的跨学科差距给软件的采用带来了挑战。在本文中,我们提出了一些实用建议,以指导生物图像分析师和开发人员为生物研究创建可访问且可用的软件。这些建议分三个阶段提出,包括软件设计、用户参与早期开发阶段以及软件传播的重要性。此外,本文还介绍了两个软件开发案例研究,以突出这些原则的实际应用,说明深思熟虑的开发、以用户为中心的设计和详尽的文档如何能够弥合软件开发人员与生物学家之间的鸿沟,促进软件的更广泛采用,推动科学发现的进一步发展。
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来源期刊
Journal of cell science
Journal of cell science 生物-细胞生物学
CiteScore
7.30
自引率
2.50%
发文量
393
审稿时长
1.4 months
期刊介绍: Journal of Cell Science publishes cutting-edge science, encompassing all aspects of cell biology.
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