Combining Chemical Catalysis with Enzymatic Steps for the Synthesis of the Artemisinin Precursor Dihydroartemisinic Acid.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-04-18 Epub Date: 2025-03-19 DOI:10.1021/acssynbio.4c00707
Vikas Upadhyay, Hongxiang Li, Jiachen He, Blake Edward Ocampo, Silas Cook, Huimin Zhao, Costas D Maranas
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Abstract

The supply of artemisinin, the primary antimalarial drug recommended by the World Health Organization (WHO), is limited due to synthesis cost and supply constraints. This study explores novel chemo-enzymatic pathways for the efficient synthesis of dihydroartemisinic acid (DHAA), the penultimate precursor to artemisinin. The key concept here is to leverage the seamless integration of chemical and enzymatic steps for more thoroughly exploring synthesis alternatives. Using novoStoic, a biosynthetic pathway design tool, we identified previously unexplored carbon- and energy-balanced pathways for converting amorpha-4,11-diene (AMPD) to DHAA. For some of the enzymatically catalyzed steps lacking efficient enzymes, chemical catalysis alternatives were proposed and implemented, leading to a hybrid chemo-enzymatic pathway design. The proposed pathway converts AMPD directly to DHAA without going through artemisinic acid (AA), making it a shorter pathway compared with the existing synthesis routes for artemisinin. This effort paves the way for the systematic design of chemo-enzymatic pathways and provides insight into decision strategies between chemical synthesis and enzymatic synthesis steps. It serves as an example of how synthesis pathway design tools can be integrated with human intuition for accelerating retrosynthesis and how AI-based tools can identify and replace human intuitions to automate the decision processes. This can help reduce human-machine interventions and improve the development of future tools for synthesis planning.

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化学催化与酶促相结合合成青蒿素前体二氢青蒿酸。
青蒿素是世界卫生组织(世卫组织)推荐的主要抗疟药物,由于合成成本和供应限制,供应有限。本研究探索了有效合成双氢青蒿酸(DHAA)的新型化学酶途径,双氢青蒿酸是青蒿素的倒数第二前体。这里的关键概念是利用化学和酶步骤的无缝整合,更彻底地探索合成替代品。利用novoStoic(一种生物合成途径设计工具),我们确定了以前未被探索的将非定形-4,11-二烯(AMPD)转化为DHAA的碳和能量平衡途径。对于一些缺乏高效酶的酶催化步骤,提出并实施了化学催化替代方案,导致化学-酶混合途径设计。该途径不经过青蒿酸(artemisinic acid, AA)直接将AMPD转化为DHAA,与现有的青蒿素合成途径相比,其途径更短。这一努力为化学-酶途径的系统设计铺平了道路,并为化学合成和酶合成步骤之间的决策策略提供了见解。它是如何将合成途径设计工具与人类直觉相结合以加速反合成以及基于人工智能的工具如何识别和取代人类直觉以实现决策过程自动化的一个例子。这有助于减少人机干预,并改善未来综合规划工具的开发。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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