Light scattering imaging modal expansion cytometry for label-free single-cell analysis with deep learning

IF 4.8 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2025-06-01 Epub Date: 2025-03-15 DOI:10.1016/j.cmpb.2025.108726
Zhi Li , Xiaoyu Zhang , Guosheng Li , Jun Peng , Xuantao Su
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Abstract

Background and Objective

Single-cell imaging plays a key role in various fields, including drug development, disease diagnosis, and personalized medicine. To obtain multi-modal information from a single-cell image, especially for label-free cells, this study develops modal expansion cytometry for label-free single-cell analysis.

Methods

The study utilizes a deep learning-based architecture to expand single-mode light scattering images into multi-modality images, including bright-field (non-fluorescent) and fluorescence images, for label-free single-cell analysis. By combining adversarial loss, L1 distance loss, and VGG perceptual loss, a new network optimization method is proposed. The effectiveness of this method is verified by experiments on simulated images, standard spheres of different sizes, and multiple cell types (such as cervical cancer and leukemia cells). Additionally, the capability of this method in single-cell analysis is assessed through multi-modal cell classification experiments, such as cervical cancer subtypes.

Results

This is demonstrated by using both cervical cancer cells and leukemia cells. The expanded bright-field and fluorescence images derived from the light scattering images align closely with those obtained through conventional microscopy, showing a contour ratio near 1 for both the whole cell and its nucleus. Using machine learning, the subtyping of cervical cancer cells achieved 92.85 % accuracy with the modal expansion images, which represents an improvement of nearly 20 % over single-mode light scattering images.

Conclusions

This study demonstrates the light scattering imaging modal expansion cytometry with deep learning has the capability to expand the single-mode light scattering image into the artificial multimodal images of label-free single cells, which not only provides the visualization of cells but also helps for the cell classification, showing great potential in the field of single-cell analysis such as cancer cell diagnosis.
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基于深度学习的无标记单细胞分析的光散射成像模态扩增细胞术。
背景与目的:单细胞成像在药物开发、疾病诊断和个性化医疗等领域发挥着关键作用。为了从单细胞图像中获得多模态信息,特别是对于无标记的细胞,本研究开发了用于无标记单细胞分析的模态扩增细胞术。方法:利用基于深度学习的架构,将单模光散射图像扩展为多模态图像,包括亮场(非荧光)和荧光图像,用于无标记单细胞分析。将对抗损失、L1距离损失和VGG感知损失相结合,提出了一种新的网络优化方法。通过模拟图像、不同大小的标准球体和多种细胞类型(如宫颈癌细胞和白血病细胞)的实验,验证了该方法的有效性。此外,通过多模态细胞分类实验(如宫颈癌亚型)评估该方法在单细胞分析中的能力。结果:宫颈癌细胞和白血病细胞均证实了这一点。从光散射图像中获得的扩展亮场和荧光图像与通过传统显微镜获得的图像密切一致,显示整个细胞及其细胞核的轮廓比接近1。利用机器学习,模态扩展图像的宫颈癌细胞亚型分型准确率达到92.85%,比单模光散射图像提高了近20%。结论:本研究证明基于深度学习的光散射成像模态扩增细胞术能够将单模光散射图像扩展为人工的无标记单细胞多模态图像,不仅提供了细胞的可视化,而且有助于细胞的分类,在肿瘤细胞诊断等单细胞分析领域显示出巨大的潜力。
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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