Genomic study of Salmonella ser. Enteritidis from poultry farms in Argentina: Epidemiology and antimicrobial resistance in twenty strains

IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Veterinary microbiology Pub Date : 2025-05-01 Epub Date: 2025-03-22 DOI:10.1016/j.vetmic.2025.110488
Teresa Magalí Hoffmann , Mario Alberto Soria , Dante Javier Bueno , Yosef Daniel Huberman , María Ishida , Brian Sauders , Gregory Deiulio , Alyssa Wiedenmayer Dickey , José Luis Medina-Santana , Christian Vinueza-Burgos
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Abstract

The escalating issue of antimicrobial resistance in pathogens transmitted through the food chain poses a significant threat to public health worldwide. Salmonella ser. Enteritidis (SE) remains a predominant cause of foodborne illness. This research aims to elucidate the genetic and antimicrobial resistance profiles of SE strains isolated from Argentine poultry farms. This study used whole genome sequencing to assess the genetic diversity and resistance patterns of 20 SE strains collected from poultry farms in Entre Ríos, Argentina, between January 2020 and February 2021. Phenotypic assays were used to detect resistance to 50 antibiotics across 14 antimicrobial classes. Genes and mutations linked to antimicrobial resistance were pinpointed on both plasmids and chromosomes of the strains. All investigated strains exhibited resistance to nitrofurantoin, and a high percentage showed resistance or intermediate sensitivity to fluoroquinolones. Genomic analysis showed the presence of resistance genes associated with aminoglycosides, β-lactams, and quinolones. The study distinctly categorized the strains into those isolated from broilers and laying hens, highlighting a complex interplay of resistance and diversity within the poultry industry. This shows antimicrobial resistance within foodborne pathogens like SE and the importance of continuous surveillance systems to track the evolution and spread of resistance. The genomic insights from this study not only enhance understanding of the resistance mechanisms but also facilitate tracking the transmission dynamics of SE, which is crucial for developing targeted interventions.
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沙门菌的基因组研究。阿根廷家禽农场肠炎:流行病学和20株抗菌素耐药性
通过食物链传播的病原体的抗微生物药物耐药性问题日益升级,对全世界的公共卫生构成重大威胁。沙门氏菌爵士。肠炎(SE)仍然是食源性疾病的主要原因。本研究旨在阐明从阿根廷家禽养殖场分离的SE菌株的遗传和抗菌素耐药性谱。本研究利用全基因组测序技术评估了2020年1月至2021年2月期间从阿根廷Entre Ríos的家禽养殖场采集的20株SE菌株的遗传多样性和耐药性模式。表型分析用于检测对14类抗菌药物中50种抗生素的耐药性。在菌株的质粒和染色体上确定了与抗菌素耐药性相关的基因和突变。所有被调查的菌株都对呋喃妥因耐药,对氟喹诺酮类药物耐药或中等敏感的比例很高。基因组分析显示存在与氨基糖苷类、β-内酰胺类和喹诺酮类药物相关的耐药基因。该研究明确地将这些菌株分为肉鸡和蛋鸡中分离的菌株,突出了家禽业中耐药性和多样性的复杂相互作用。这表明了SE等食源性病原体的抗微生物药物耐药性,以及持续监测系统对追踪耐药性演变和传播的重要性。本研究的基因组学见解不仅增强了对抗性机制的理解,而且有助于跟踪SE的传播动态,这对于制定有针对性的干预措施至关重要。
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来源期刊
Veterinary microbiology
Veterinary microbiology 农林科学-兽医学
CiteScore
5.90
自引率
6.10%
发文量
221
审稿时长
52 days
期刊介绍: Veterinary Microbiology is concerned with microbial (bacterial, fungal, viral) diseases of domesticated vertebrate animals (livestock, companion animals, fur-bearing animals, game, poultry, fish) that supply food, other useful products or companionship. In addition, Microbial diseases of wild animals living in captivity, or as members of the feral fauna will also be considered if the infections are of interest because of their interrelation with humans (zoonoses) and/or domestic animals. Studies of antimicrobial resistance are also included, provided that the results represent a substantial advance in knowledge. Authors are strongly encouraged to read - prior to submission - the Editorials (''Scope or cope'' and ''Scope or cope II'') published previously in the journal. The Editors reserve the right to suggest submission to another journal for those papers which they feel would be more appropriate for consideration by that journal. Original research papers of high quality and novelty on aspects of control, host response, molecular biology, pathogenesis, prevention, and treatment of microbial diseases of animals are published. Papers dealing primarily with immunology, epidemiology, molecular biology and antiviral or microbial agents will only be considered if they demonstrate a clear impact on a disease. Papers focusing solely on diagnostic techniques (such as another PCR protocol or ELISA) will not be published - focus should be on a microorganism and not on a particular technique. Papers only reporting microbial sequences, transcriptomics data, or proteomics data will not be considered unless the results represent a substantial advance in knowledge. Drug trial papers will be considered if they have general application or significance. Papers on the identification of microorganisms will also be considered, but detailed taxonomic studies do not fall within the scope of the journal. Case reports will not be published, unless they have general application or contain novel aspects. Papers of geographically limited interest, which repeat what had been established elsewhere will not be considered. The readership of the journal is global.
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