Promiscuity of an Alcohol-Dependent Hemiterpene Pathway for the In Vivo Production of a Non-Natural Alkylated Tryptophan Derivative.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-04-18 Epub Date: 2025-03-26 DOI:10.1021/acssynbio.4c00865
Anuran K Gayen, Rachael S Pitts Hall, Sean Lund, Gavin J Williams
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Abstract

The prenyl motif determines the biological activity of many natural products. Yet, structural diversification of the prenyl site has been restricted due to the limitations of native biosynthetic pathways to hemiterpenes, the universal isoprenoid building blocks. Previously, we developed the artificial alcohol dependent hemiterpene (ADH) pathway comprising the acid phosphatase PhoN and the isopentenyl kinase IPK to provide natural isoprenoids assembled from hemiterpenes in vivo. Here, we revealed the broad specificity of the first enzyme of the ADH module, PhoN, and a downstream aromatic prenyltransferase. We then showed that the combined promiscuity of the ADH module and prenyltransferase were sufficient to produce a non-natural-alkylated tryptophan derivative in vivo when coupled with the previously described promiscuity of IPK. The short and modular ADH pathway provides a convenient and scalable approach to alkyl-pyrophosphates and facilitates probing the promiscuity of other downstream enzymes involved in isoprenoid biosynthesis without the tedious in vitro preparation of alkyl-pyrophosphates. This sets the stage to leverage the ADH pathway to forward engineer isoprenoid biosynthesis and expand its chemical space accessible to synthetic biology.

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非天然烷基化色氨酸衍生物在体内产生的酒精依赖半萜途径的乱交性。
戊烯基基序决定了许多天然产物的生物活性。然而,由于半萜的天然生物合成途径的限制,戊烯基位点的结构多样化受到限制,半萜是通用的类异戊二烯构建块。在此之前,我们开发了由酸性磷酸酶PhoN和异戊烯基激酶IPK组成的人工醇依赖性半萜(ADH)途径,以在体内提供由半萜组装而成的天然类异戊烯。在这里,我们揭示了ADH模块的第一个酶PhoN和下游芳香戊烯基转移酶的广泛特异性。然后,我们发现,当ADH模块和戊烯基转移酶的混杂性与先前描述的IPK的混杂性结合时,足以在体内产生非天然烷基化色氨酸衍生物。短而模块化的ADH途径为烷基焦磷酸提供了一种方便且可扩展的方法,并有助于探测涉及类异戊二烯生物合成的其他下游酶的混杂性,而无需繁琐的烷基焦磷酸体外制备。这为利用ADH途径来推进类异戊二烯生物合成和扩大其可用于合成生物学的化学空间奠定了基础。
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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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