Cell-Free Reaction System for ATP Regeneration from d-Fructose.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-04-18 Epub Date: 2025-03-26 DOI:10.1021/acssynbio.4c00877
Franziska Kraußer, Kenny Rabe, Christopher M Topham, Julian Voland, Laura Lilienthal, Jan-Ole Kundoch, Daniel Ohde, Andreas Liese, Thomas Walther
{"title":"Cell-Free Reaction System for ATP Regeneration from d-Fructose.","authors":"Franziska Kraußer, Kenny Rabe, Christopher M Topham, Julian Voland, Laura Lilienthal, Jan-Ole Kundoch, Daniel Ohde, Andreas Liese, Thomas Walther","doi":"10.1021/acssynbio.4c00877","DOIUrl":null,"url":null,"abstract":"<p><p>Adenosine triphosphate (ATP)-dependent <i>in vitro</i> bioprocesses, such as cell-free protein synthesis and the production of phosphorylated fine chemicals, are of considerable industrial significance. However, their implementation is mainly hindered by the high cost of ATP. We propose and demonstrate the feasibility of a cell-free ATP regeneration system based on the <i>in situ</i> generation of the high-energy compound acetyl phosphate from low-cost d-fructose and inorganic phosphate substrates. The enzyme cascade chains d-fructose phosphoketolase, d-erythrose isomerase, d-erythrulose phosphoketolase, and glycolaldehyde phosphoketolase activities theoretically enabling production of 3 mol ATP per mol of d-fructose. Through a semirational engineering approach and the screening of nine single-mutation libraries, we optimized the phosphoketolase (PKT) from <i>Bifidobacterium adolescentis</i>, identifying the improved variant Bad.F6Pkt H548N. This mutant exhibited a 5.6-fold increase in d-fructose activity, a 2.2-fold increase in d-erythrulose activity, and a 1.3-fold increase in glycolaldehyde activity compared to the wild-type enzyme. The Bad.F6Pkt H548N mutant was initially implemented in a cell-free reaction system together with an acetate kinase from <i>Geobacillus stearothermophilus</i> and a glycerol kinase from <i>Cellulomonas</i> sp. for the production of glycerol-3 phosphate from ADP and glycerol. We demonstrated the feasibility of ATP regeneration from 25 mM d-fructose with a stoichiometry of 1 mol of ATP per mol of C<sub>6</sub> ketose. Subsequently, the reaction system was enhanced by incorporating d-erythrose isomerase activity provided by a l-rhamnose isomerase from <i>Pseudomonas stutzeri</i>. In the complete system, the ATP yield increased to 2.53 mol mol<sub>fructose</sub><sup>-1</sup> with a maximum productivity of 7.2 mM h<sup>-1</sup>.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":"1250-1263"},"PeriodicalIF":3.9000,"publicationDate":"2025-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012885/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.4c00877","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/3/26 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

Adenosine triphosphate (ATP)-dependent in vitro bioprocesses, such as cell-free protein synthesis and the production of phosphorylated fine chemicals, are of considerable industrial significance. However, their implementation is mainly hindered by the high cost of ATP. We propose and demonstrate the feasibility of a cell-free ATP regeneration system based on the in situ generation of the high-energy compound acetyl phosphate from low-cost d-fructose and inorganic phosphate substrates. The enzyme cascade chains d-fructose phosphoketolase, d-erythrose isomerase, d-erythrulose phosphoketolase, and glycolaldehyde phosphoketolase activities theoretically enabling production of 3 mol ATP per mol of d-fructose. Through a semirational engineering approach and the screening of nine single-mutation libraries, we optimized the phosphoketolase (PKT) from Bifidobacterium adolescentis, identifying the improved variant Bad.F6Pkt H548N. This mutant exhibited a 5.6-fold increase in d-fructose activity, a 2.2-fold increase in d-erythrulose activity, and a 1.3-fold increase in glycolaldehyde activity compared to the wild-type enzyme. The Bad.F6Pkt H548N mutant was initially implemented in a cell-free reaction system together with an acetate kinase from Geobacillus stearothermophilus and a glycerol kinase from Cellulomonas sp. for the production of glycerol-3 phosphate from ADP and glycerol. We demonstrated the feasibility of ATP regeneration from 25 mM d-fructose with a stoichiometry of 1 mol of ATP per mol of C6 ketose. Subsequently, the reaction system was enhanced by incorporating d-erythrose isomerase activity provided by a l-rhamnose isomerase from Pseudomonas stutzeri. In the complete system, the ATP yield increased to 2.53 mol molfructose-1 with a maximum productivity of 7.2 mM h-1.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
d-果糖再生ATP的无细胞反应体系。
三磷酸腺苷(ATP)依赖的体外生物过程,如无细胞蛋白质合成和磷酸化精细化学品的生产,具有相当大的工业意义。然而,它们的实施主要受到ATP高成本的阻碍。我们提出并证明了一种无细胞ATP再生系统的可行性,该系统基于低成本d-果糖和无机磷酸盐底物原位生成高能化合物乙酰磷酸。酶级联链d-果糖磷酸酮醇酶、d-红酶异构酶、d-赤藓糖磷酸酮醇酶和乙醇醛磷酸酮醇酶活性,理论上使每mol d-果糖产生3 mol ATP。通过半基因工程方法和9个单突变文库的筛选,我们对青少年双歧杆菌磷酸酮醇酶(PKT)进行了优化,鉴定出改进的变体Bad。F6Pkt H548N。与野生型相比,该突变体的d-果糖活性增加了5.6倍,d-赤藓糖活性增加了2.2倍,乙醇醛活性增加了1.3倍。坏。F6Pkt H548N突变体最初在无细胞反应体系中与来自嗜脂嗜热地杆菌的醋酸激酶和来自Cellulomonas sp.的甘油激酶一起用于从ADP和甘油生产甘油-3磷酸。我们以每mol C6酮糖1 mol ATP的化学计量量证明了从25 mM d-果糖中再生ATP的可行性。随后,通过加入来自假单胞菌的l-鼠李糖异构酶提供的d-红细胞异构酶活性,增强了反应系统。在整个体系中,ATP产率提高到2.53 mol mol mol mol - fructose-1,最大产率为7.2 mM h-1。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
期刊最新文献
OSCAR: A Modular Open-Source Robotic Platform for Biological Laboratories. One-Step Multi-fragment Assembly and Targeted Genomic Integration in Corynebacterium glutamicum. Computational Design of CYP102A1 Variants for Biosynthesis of a Next-Generation Antiplatelet Drug DT-678. Metabolic Engineering and Synthetic Biology-Driven Strategies to Harness Microbial Production of Adipic Acid: Current Status and Future Direction. Benzylisoquinoline Alkaloid Production in Yeast via Norlaudanosoline Improves Titer, Selectivity, and Yield.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1