Atomistic Insights into gp82 Binding: A Microsecond, Million-Atom Exploration of Trypanosoma cruzi Host-Cell Invasion.

IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemistry Biochemistry Pub Date : 2025-06-03 Epub Date: 2025-03-28 DOI:10.1021/acs.biochem.4c00710
Raissa S L Rosa, Manuela Leal da Silva, Rafael C Bernardi
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Abstract

Chagas disease, caused by the protozoan Trypanosoma cruzi, affects millions globally, leading to severe cardiac and gastrointestinal complications in its chronic phase. The invasion of host cells by T. cruzi is mediated by the interaction between the parasite's glycoprotein gp82 and the human receptor lysosome-associated membrane protein 2 (LAMP2). While experimental studies have identified a few residues involved in this interaction, a comprehensive molecular-level understanding has been lacking. In this study, we present a 1.44-million-atom computational model of the gp82 complex, including over 3300 lipids, glycosylation sites, and full molecular representations of gp82 and LAMP2, making it the most complete model of a parasite-host interaction to date. Using microsecond-long molecular dynamics simulations and dynamic network analysis, we identified critical residue interactions, including novel regions of contact that were previously uncharacterized. Our findings also highlight the significance of the transmembrane domain of LAMP2 in stabilizing the complex. These insights extend beyond traditional hydrogen bond interactions, revealing a complex network of cooperative motions that facilitate T. cruzi invasion. This study not only confirms key experimental observations but also uncovers new molecular targets for therapeutic intervention, offering a potential pathway to disrupt T. cruzi infection and combat Chagas disease.

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gp82结合的原子观察:克氏锥虫宿主细胞侵袭的微秒、百万原子探索。
由原生动物克氏锥虫引起的恰加斯病影响全球数百万人,在其慢慢性阶段导致严重的心脏和胃肠道并发症。克氏锥虫入侵宿主细胞是通过其糖蛋白gp82与人受体溶酶体相关膜蛋白2 (LAMP2)的相互作用介导的。虽然实验研究已经确定了参与这种相互作用的一些残基,但缺乏全面的分子水平的理解。在这项研究中,我们提出了gp82复合物的144万个原子计算模型,包括超过3300个脂质,糖基化位点,以及gp82和LAMP2的完整分子表征,使其成为迄今为止最完整的寄生虫-宿主相互作用模型。利用微秒长的分子动力学模拟和动态网络分析,我们确定了关键的残留相互作用,包括以前未表征的新接触区域。我们的发现还强调了LAMP2跨膜结构域在稳定该复合物中的重要性。这些见解超越了传统的氢键相互作用,揭示了一个复杂的协同运动网络,促进了T. cruzi的入侵。这项研究不仅证实了关键的实验观察结果,而且揭示了新的治疗干预分子靶点,为破坏T. cruzi感染和对抗恰加斯病提供了一条潜在的途径。
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来源期刊
Biochemistry Biochemistry
Biochemistry Biochemistry 生物-生化与分子生物学
CiteScore
5.50
自引率
3.40%
发文量
336
审稿时长
1-2 weeks
期刊介绍: Biochemistry provides an international forum for publishing exceptional, rigorous, high-impact research across all of biological chemistry. This broad scope includes studies on the chemical, physical, mechanistic, and/or structural basis of biological or cell function, and encompasses the fields of chemical biology, synthetic biology, disease biology, cell biology, nucleic acid biology, neuroscience, structural biology, and biophysics. In addition to traditional Research Articles, Biochemistry also publishes Communications, Viewpoints, and Perspectives, as well as From the Bench articles that report new methods of particular interest to the biological chemistry community.
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