CDC42 Regulatory Patterns Related To Inflammatory Bowel Disease and Hyperglycemia.

Journal of bioinformatics and systems biology : Open access Pub Date : 2025-01-01 Epub Date: 2025-02-20
Marija Stojanovic, Devendra K Agrawal
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Abstract

As a member of the rat sarcoma virus homolog (Rho) guanosine triphosphatases (GTPases) family, Cdc42 represents a "switch" molecule, by changing from inactive (GDP-associated) to active form (GTP-associated) and vice versa. Cdc42 is activated by the guanine nucleotide exchange factors (GEFs), in contrast to GTPase-activating proteins (GAPs) which are responsable for formation of GDP-binding, inactive form of Cdc42. Some of the fundamental cellular functions are regulated by Cdc42 such as cytosceleton dynamics, cell cycling, transcription and cellular trafficking. In the gastrointestinal system, Cdc42 participates in maintenance of the functional epithelial barrier by controling intestinal epithelial cell polarity and interconnections. In addition, Cdc42 expression in pancreatic β-cells is of great importance for glucose-stimulated insulin secretion. From the pathophysiological point of view, literature data provide some evidence for Cdc42 sigaling in inflammatory bowel disease, as well as in hyperglycemic conditions related to diabetes mellitus. However, whether and by which mechanism Cdc42 contributes to the IBD patophysiology in hyperglycemic conditions is still not fully understood. Therefore, we performed bioinformatics analysis to predict transcriptional factor-gene interactions related to Cdc42 signaling in inflammatory bowel disease in hyperglycemic conditions. In silico analysis predicts various interactions between input genes and output transcriptional factors, and therefore reveals the molecules with the highest predicted effect on particular genes. Based on the predictive interactions with the intracellular molecules, carefully designed in vitro or in vivo studies are required to get better insight in the pathways of interest. Better understanding of Cdc42 molecular pathway in inflammatory bowel disease and hyperglycemia will help identifying potential targets for therapeutical modifications in clinical setting resulting in better control of the disease progression.

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与炎症性肠病和高血糖相关的CDC42调节模式
作为大鼠肉瘤病毒同源(Rho)鸟苷三磷酸酶(GTPases)家族的成员,Cdc42代表了一种“开关”分子,通过从无活性(与gdp相关)转变为活性(与gtp相关),反之亦然。Cdc42由鸟嘌呤核苷酸交换因子(GEFs)激活,与gtpase激活蛋白(gap)相反,gtpase激活蛋白负责形成与gdp结合的无活性Cdc42。一些基本的细胞功能是由Cdc42调控的,如细胞骨架动力学、细胞周期、转录和细胞运输。在胃肠道系统中,Cdc42通过控制肠上皮细胞极性和相互连接参与维持功能性上皮屏障。此外,Cdc42在胰腺β细胞中的表达对葡萄糖刺激胰岛素分泌具有重要意义。从病理生理学的角度来看,文献资料提供了Cdc42信号在炎症性肠病以及与糖尿病相关的高血糖状况中的一些证据。然而,Cdc42是否以及通过何种机制参与高血糖条件下IBD的病理生理尚不完全清楚。因此,我们进行了生物信息学分析,以预测高血糖条件下炎症性肠病中与Cdc42信号相关的转录因子-基因相互作用。硅分析预测了输入基因和输出转录因子之间的各种相互作用,从而揭示了对特定基因具有最高预测作用的分子。基于与细胞内分子的预测相互作用,需要仔细设计体外或体内研究,以更好地了解感兴趣的途径。更好地了解炎症性肠病和高血糖中的Cdc42分子途径将有助于确定临床环境中治疗修改的潜在靶点,从而更好地控制疾病进展。
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