Theoretical study of the nature of σ-hole regium bond between CuX/AgX/AuX and pyridine

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2025-04-07 DOI:10.1007/s00894-025-06360-5
Junyong Wu, Hua Yan, Hao Chen, Guoliang Dai
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Abstract

Context

The σ-hole regium bond complexes between coinage metal monohalide molecule CuX/AgX/AuX (X = F, Cl, and Br) and pyridine (C5H5N), which have linear orientation and perpendicular orientation, have been systematically probed at the MP2/aug-cc-pVTZ level. By comparing the calculated interaction energy, we can see that the linear orientation interactions are a little stronger than the corresponding perpendicular orientation interactions in C5H5N-CuX/AgX/AuX complexes. The binding energies for linear orientation regium bond complexes range from − 34 to − 60 kcal/mol, while those perpendicular orientation regium bond complexes are from − 24 to − 50 kcal/mol. Both types of interactions energies all tend to follow the Au > Cu > Ag order and reduced with the decrease in electronegativity F > Cl > Br in C5H5N-CuX/AgX/AuX complexes. The electrostatic energy is the major source of the attraction for the linear orientation regium bond interactions, while for the perpendicular orientation regium bond interactions are mainly due to electrostatic and induction energy.

Methods

All the complexes and respective monomers were optimized at the MP2/aug-cc-pVTZ level. Relativistic effects were considered for Cu, Ag, Au, and Br by using the aug-cc-pVTZ-PP basis set. The NBO population analysis and AIM and IRI analysis were carried out. The interaction energies of the σ-hole regium bonds complexes were decomposed by using the symmetric adaptive perturbation theory (SAPT).

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CuX/AgX/AuX与吡啶之间的σ-空穴键性质的理论研究
本文在MP2/aug-cc-pVTZ水平上系统地研究了金属单卤化物分子CuX/AgX/AuX (X = F, Cl和Br)与吡啶(C5H5N)之间具有线性取向和垂直取向的σ-空穴键配合物。通过比较计算得到的相互作用能,可以看出C5H5N-CuX/AgX/AuX配合物的线性取向相互作用略强于相应的垂直取向相互作用。线性取向的键配合物结合能在−34 ~−60 kcal/mol之间,而垂直取向的键配合物结合能在−24 ~−50 kcal/mol之间。在C5H5N-CuX/AgX/AuX配合物中,这两种类型的相互作用能量都倾向于遵循Au >; Cu >; Ag的顺序,并随着电负性F >; Cl >; Br的降低而降低。对于线性取向的态键相互作用,静电能是吸引的主要来源,而对于垂直取向的态键相互作用,静电能和感应能是吸引的主要来源。方法在MP2/aug-cc-pVTZ水平上对所有配合物及单体进行优化。使用aug-cc-pVTZ-PP基集考虑Cu、Ag、Au和Br的相对论效应。进行NBO种群分析、AIM和IRI分析。采用对称自适应微扰理论(SAPT)分解了σ-空穴态键配合物的相互作用能。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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