Design and Production of Geranylated Cyclic Peptides by the RiPP Enzymes SyncM and PirF

IF 5.4 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Biomacromolecules Pub Date : 2025-05-12 DOI:10.1021/acs.biomac.5c00260
Yanli Xu, Fleur Ruijne, Manel Garcia Diez, Jorrit Jilles Stada, Oscar P. Kuipers
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Abstract

The growing threat of antibiotic resistance highlights the urgent need for new antimicrobial agents. Nonribosomal peptides (NRPs) are potent antibiotics with complex structures, but generating novel NRP analogues is costly and inefficient. An emerging alternative is using ribosomally synthesized and post-translationally modified peptides (RiPPs), which are gene-encoded, allowing for easier mutagenesis and modification. This study aimed to produce peptides with two key structural elements of many NRP antibiotics: a macrocycle and an N-terminal lipid moiety. The RiPP enzymes SyncM and PirF were employed-SyncM introduced lanthionine or methyllanthionine macrocycles, while PirF incorporated isoprenyl chains to emulate the lipid moieties in NRPs. Both enzymes successfully modified the templates, and their combined use generated lipidated macrocyclic peptides, resembling lipopeptide antibiotics. These findings demonstrate the potential of SyncM and PirF as versatile tools for designing novel gene-encoded NRP mimics, enabling high-throughput screening for new bioactive peptides.
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用RiPP酶SyncM和PirF设计和生产香叶酰化环肽。
抗生素耐药性的威胁日益严重,这突出表明迫切需要新的抗微生物药物。非核糖体肽(NRP)是一种结构复杂的强效抗生素,但制备新型NRP类似物成本高且效率低。一种新兴的替代方法是使用核糖体合成和翻译后修饰肽(RiPPs),它们是基因编码的,允许更容易的突变和修饰。本研究旨在生产具有许多NRP抗生素的两个关键结构元件的肽:一个大环和一个n端脂质片段。使用了RiPP酶SyncM和PirF, SyncM引入了棉硫氨酸或甲基棉硫氨酸大环,而PirF引入了异戊烯基链来模拟nrp中的脂质部分。两种酶都成功地修饰了模板,它们的联合使用产生了脂化的大环肽,类似于脂肽类抗生素。这些发现证明了SyncM和PirF作为设计新型基因编码NRP模拟物的通用工具的潜力,使高通量筛选新的生物活性肽成为可能。
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来源期刊
Biomacromolecules
Biomacromolecules 化学-高分子科学
CiteScore
10.60
自引率
4.80%
发文量
417
审稿时长
1.6 months
期刊介绍: Biomacromolecules is a leading forum for the dissemination of cutting-edge research at the interface of polymer science and biology. Submissions to Biomacromolecules should contain strong elements of innovation in terms of macromolecular design, synthesis and characterization, or in the application of polymer materials to biology and medicine. Topics covered by Biomacromolecules include, but are not exclusively limited to: sustainable polymers, polymers based on natural and renewable resources, degradable polymers, polymer conjugates, polymeric drugs, polymers in biocatalysis, biomacromolecular assembly, biomimetic polymers, polymer-biomineral hybrids, biomimetic-polymer processing, polymer recycling, bioactive polymer surfaces, original polymer design for biomedical applications such as immunotherapy, drug delivery, gene delivery, antimicrobial applications, diagnostic imaging and biosensing, polymers in tissue engineering and regenerative medicine, polymeric scaffolds and hydrogels for cell culture and delivery.
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