Docking Survey, ADME, Toxicological Insights, and Mechanistic Exploration of the Diels–Alder Reaction Between Hexachlorocyclopentadiene and Dichloroethylene

IF 4.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Journal of Computational Chemistry Pub Date : 2025-04-09 DOI:10.1002/jcc.70092
Agnieszka Kącka-Zych, Abdellah Zeroual, Asad Syed, Ali H. Bahkali
{"title":"Docking Survey, ADME, Toxicological Insights, and Mechanistic Exploration of the Diels–Alder Reaction Between Hexachlorocyclopentadiene and Dichloroethylene","authors":"Agnieszka Kącka-Zych,&nbsp;Abdellah Zeroual,&nbsp;Asad Syed,&nbsp;Ali H. Bahkali","doi":"10.1002/jcc.70092","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>The Diels–Alder (DA) reaction between hexachlorocyclopentadiene and 1,2-dichloroethylene has been studied using the Molecular Electron Density Theory (MEDT) through Density Functional Theory (DFT) calculations at the B3LYP/6−31G(d) level. The electronic structure of the reagents has been characterized through the electron localization function (ELF) and the conceptual DFT (CDFT). The DA reaction of hexachlorocyclopentadiene with 1,2-dichloroethylene proceeds via a synchronous or low asynchronous one-step mechanism. Based on the conducted research, a two-step mechanism with a biradical intermediate was completely ruled out. Bonding Evolution Theory (BET) study of the DA reaction shows that this reaction is topologically characterized by nine different phases. The reaction begins with the rupture of the double bonds in substrate molecules. Formation of the first C<span></span>C single bond takes place in phase VII, while the second C<span></span>C single bond takes place in phase IX. Formation of these two single bonds takes place by sharing the nonbonding electron densities of the two pairs of <i>pseudoradical</i> centers. In addition, this study evaluates some ligands as potential HIV-1 inhibitors. Docking results identified <b>5</b> and <b>5-F</b> as the most promising candidates, surpassing AZT in theoretical affinity. ADME analysis revealed limitations in solubility and absorption for compounds <b>3</b>, <b>4</b>, and <b>5</b>, while <b>5-F</b> showed better solubility but low absorption. Toxicity concerns around <b>5-F</b> suggest the need for risk management, while the other compounds require further safety assessment.</p>\n </div>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":"46 10","pages":""},"PeriodicalIF":4.8000,"publicationDate":"2025-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/jcc.70092","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

The Diels–Alder (DA) reaction between hexachlorocyclopentadiene and 1,2-dichloroethylene has been studied using the Molecular Electron Density Theory (MEDT) through Density Functional Theory (DFT) calculations at the B3LYP/6−31G(d) level. The electronic structure of the reagents has been characterized through the electron localization function (ELF) and the conceptual DFT (CDFT). The DA reaction of hexachlorocyclopentadiene with 1,2-dichloroethylene proceeds via a synchronous or low asynchronous one-step mechanism. Based on the conducted research, a two-step mechanism with a biradical intermediate was completely ruled out. Bonding Evolution Theory (BET) study of the DA reaction shows that this reaction is topologically characterized by nine different phases. The reaction begins with the rupture of the double bonds in substrate molecules. Formation of the first CC single bond takes place in phase VII, while the second CC single bond takes place in phase IX. Formation of these two single bonds takes place by sharing the nonbonding electron densities of the two pairs of pseudoradical centers. In addition, this study evaluates some ligands as potential HIV-1 inhibitors. Docking results identified 5 and 5-F as the most promising candidates, surpassing AZT in theoretical affinity. ADME analysis revealed limitations in solubility and absorption for compounds 3, 4, and 5, while 5-F showed better solubility but low absorption. Toxicity concerns around 5-F suggest the need for risk management, while the other compounds require further safety assessment.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
六氯环戊二烯与二氯乙烯的 Diels-Alder 反应的对接调查、ADME、毒理学见解和机理探索
采用分子电子密度理论(MEDT),在B3LYP/6−31G(d)水平上通过密度泛函理论(DFT)计算,研究了六氯环戊二烯与1,2-二氯乙烷之间的Diels-Alder (DA)反应。通过电子定位函数(ELF)和概念DFT (CDFT)表征了试剂的电子结构。六氯环戊二烯与1,2-二氯乙烯的DA反应采用同步或低异步一步反应机理进行。根据所进行的研究,完全排除了双自由基中间体的两步反应机理。对DA反应的键演化理论(BET)研究表明,该反应具有9个不同相的拓扑特征。反应开始于底物分子中双键的断裂。第一个C - 5c单键的形成发生在相VII,第二个C - 5c单键的形成发生在相IX。这两个单键的形成是通过共享两对伪基中心的非键电子密度来实现的。此外,本研究评估了一些配体作为潜在的HIV-1抑制剂。对接结果确定5和5- f是最有希望的候选者,在理论亲和力上超过AZT。ADME分析显示化合物3、4和5在溶解度和吸收方面存在局限性,而5- f溶解度较好,但吸收较低。对5-F的毒性担忧表明需要进行风险管理,而其他化合物则需要进一步的安全性评估。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
期刊最新文献
Computational Characterization of the Energetics, Structure, and Spectroscopy of Biofuel Precursors: The Case of Furfural-Acetone-Furfural. Computational Insights Into All-Fused Ring Non-Fullerene Acceptors for Enhanced Stability and Performance. Unraveling the Novel Furan-Based π-Conjugated Systems: Insights From Optimally Tuned Long-Range Corrected DFT Functionals, PBC-DFT Methods, and Excited States Studies for Oxa[n]Helicenes. Direct and Superexchange Couplings for Electron Transfer in Donor-Bridge-Acceptor Systems. Accuracy and Scaling Factors of Non-Empirical Double-Hybrid Density Functionals for Harmonic and Fundamental Frequencies (And ZPVE).
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1