CHA-based microarray with Cas12a universal readout for multiple microRNA detection

IF 5.3 2区 化学 Q1 CHEMISTRY, ANALYTICAL Microchimica Acta Pub Date : 2025-04-11 DOI:10.1007/s00604-025-07049-5
Mingkun Liu, Lei Yan, Zhixiong Lin, Dianming Wu, Bin Qiu, Shangeng Weng
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Abstract

Hirschsprung’s disease (HSCR), a congenital condition characterized by the absence of nerve cells in the intestinal wall, often requires early and accurate diagnosis for optimal patient outcomes. In this study, we developed a novel and ultrasensitive biosensing strategy for the detection of HSCR-related microRNAs (miRNAs) by integrating catalytic hairpin assembly (CHA) with CRISPR-Cas12a technology. A two-stage process consists of array recognition, and a universal readout is designed. In the first stage, target miRNAs are recognized and amplified on a solid-phase microarray, while in the second stage, the accumulated conversion chains which are not related to target sequences, activate Cas12a, leading to the cleavage of reporter DNA and the generation of a fluorescence signal spatially separated from the first stage. The proposed method was validated for the comprehensive detection of HSCR-related miRNAs and demonstrated high sensitivity and specificity. This work represents a significant advancement in miRNA diagnostics and holds potential for broader clinical applications.

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具有Cas12a通用读出器的基于cha的微阵列,用于多种microRNA检测
赫氏肠病(HSCR)是一种以肠壁神经细胞缺失为特征的先天性疾病,通常需要早期准确诊断才能获得最佳疗效。在这项研究中,我们将催化发夹组装(CHA)与 CRISPR-Cas12a 技术相结合,开发出一种新型超灵敏生物传感策略,用于检测与 HSCR 相关的 microRNA(miRNA)。该方法包括阵列识别和通用读出两个阶段。在第一阶段,目标 miRNA 在固相芯片上被识别和扩增;在第二阶段,积累的与目标序列无关的转换链激活 Cas12a,导致报告 DNA 断裂,产生与第一阶段在空间上分离的荧光信号。所提出的方法经验证可用于全面检测与 HSCR 相关的 miRNA,并表现出较高的灵敏度和特异性。这项工作代表了 miRNA 诊断领域的重大进展,具有更广泛的临床应用潜力。
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来源期刊
Microchimica Acta
Microchimica Acta 化学-分析化学
CiteScore
9.80
自引率
5.30%
发文量
410
审稿时长
2.7 months
期刊介绍: As a peer-reviewed journal for analytical sciences and technologies on the micro- and nanoscale, Microchimica Acta has established itself as a premier forum for truly novel approaches in chemical and biochemical analysis. Coverage includes methods and devices that provide expedient solutions to the most contemporary demands in this area. Examples are point-of-care technologies, wearable (bio)sensors, in-vivo-monitoring, micro/nanomotors and materials based on synthetic biology as well as biomedical imaging and targeting.
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