Instability of Trypanosoma cruzi DNA in blood lysates: importance for PCR DNA-based diagnosis.

Ximena Coronado, Sylvia Ortiz, Olga Lastra, Milton Larrondo, Marlene Rozas, Aldo Solari
{"title":"Instability of Trypanosoma cruzi DNA in blood lysates: importance for PCR DNA-based diagnosis.","authors":"Ximena Coronado,&nbsp;Sylvia Ortiz,&nbsp;Olga Lastra,&nbsp;Milton Larrondo,&nbsp;Marlene Rozas,&nbsp;Aldo Solari","doi":"10.2165/00066982-200509010-00005","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>In order to evaluate the stability of Trypanosoma cruzi kinetoplast DNA (kDNA), the blood samples from seven patients with Chagas disease were stored in different buffers and at different temperatures.</p><p><strong>Methods: </strong>Three different buffers were used: buffer A, 6 mol/L guanidine-HCl; buffer B, 6M guanidine-HCl and 0.2M EDTA pH 7.5; and buffer C, 6M guanidine-HCl, 0.2M EDTA pH 7.5 and 10 microM dl-alpha-tocopherol (Roche, Basal, Switzerland). Two temperatures were used: 4 degrees C and 25 degrees C. Vitamin E was added to the blood lysates as an antioxidant. T. cruzi kDNA was obtained by phenol extraction, and then PCR amplifications and Southern blot were carried out in each DNA sample up to 90 days of blood storage. The iron content of each sample was determined by atomic absorption spectrophotometry.</p><p><strong>Results: </strong>Overall, there is an association between T. cruzi kDNA stability and the storage time of blood samples. No significant differences were detected in T. cruzi kDNA stability in the presence or absence of vitamin E or with citrate or EDTA as an anticoagulant. There was no statistical difference in the failure of PCR-based kDNA detection with these different storage buffers, temperatures or iron levels.</p><p><strong>Conclusions: </strong>The blood lysates promote T. cruzi kDNA damage in a time-dependent manner that reduces the ability to detect the genomic DNA of an infectious agent by PCR. The high concentration of guanidine-HCl denatured proteins in these storage conditions probably denotes a non-enzymatic kDNA lysis.</p>","PeriodicalId":79690,"journal":{"name":"Molecular diagnosis : a journal devoted to the understanding of human disease through the clinical application of molecular biology","volume":"9 1","pages":"35-40"},"PeriodicalIF":0.0000,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2165/00066982-200509010-00005","citationCount":"5","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular diagnosis : a journal devoted to the understanding of human disease through the clinical application of molecular biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2165/00066982-200509010-00005","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 5

Abstract

Objective: In order to evaluate the stability of Trypanosoma cruzi kinetoplast DNA (kDNA), the blood samples from seven patients with Chagas disease were stored in different buffers and at different temperatures.

Methods: Three different buffers were used: buffer A, 6 mol/L guanidine-HCl; buffer B, 6M guanidine-HCl and 0.2M EDTA pH 7.5; and buffer C, 6M guanidine-HCl, 0.2M EDTA pH 7.5 and 10 microM dl-alpha-tocopherol (Roche, Basal, Switzerland). Two temperatures were used: 4 degrees C and 25 degrees C. Vitamin E was added to the blood lysates as an antioxidant. T. cruzi kDNA was obtained by phenol extraction, and then PCR amplifications and Southern blot were carried out in each DNA sample up to 90 days of blood storage. The iron content of each sample was determined by atomic absorption spectrophotometry.

Results: Overall, there is an association between T. cruzi kDNA stability and the storage time of blood samples. No significant differences were detected in T. cruzi kDNA stability in the presence or absence of vitamin E or with citrate or EDTA as an anticoagulant. There was no statistical difference in the failure of PCR-based kDNA detection with these different storage buffers, temperatures or iron levels.

Conclusions: The blood lysates promote T. cruzi kDNA damage in a time-dependent manner that reduces the ability to detect the genomic DNA of an infectious agent by PCR. The high concentration of guanidine-HCl denatured proteins in these storage conditions probably denotes a non-enzymatic kDNA lysis.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
血液中克氏锥虫DNA的不稳定性:对PCR DNA诊断的重要性。
目的:为评价克氏锥虫动质体DNA (kDNA)的稳定性,对7例恰加斯病患者的血液标本进行不同缓冲液和不同温度的保存。方法:采用三种不同的缓冲液:缓冲液A, 6 mol/L胍- hcl;缓冲液B, 6M胍- hcl和0.2M EDTA pH 7.5;和缓冲液C, 6M胍- hcl, 0.2M EDTA pH 7.5和10微米dl- α -生育酚(Roche,基底,瑞士)。使用了两种温度:4摄氏度和25摄氏度。将维生素E作为抗氧化剂添加到血液裂解物中。通过苯酚提取得到克氏T. crozi kDNA,然后对每个DNA样本进行PCR扩增和Southern blot,直至血液储存90天。采用原子吸收分光光度法测定各样品的铁含量。结果:总体而言,克氏锥虫kDNA的稳定性与血样保存时间有关。在存在或不存在维生素E或柠檬酸盐或EDTA作为抗凝剂的情况下,克氏T.克氏体kDNA的稳定性没有显著差异。在这些不同的储存缓冲液、温度或铁水平下,基于pcr的kDNA检测失败率没有统计学差异。结论:血液裂解物以一种时间依赖性的方式促进克氏锥虫的kDNA损伤,从而降低了PCR检测传染性病原体基因组DNA的能力。在这些储存条件下,高浓度的胍-盐酸变性蛋白质可能表示非酶促的kDNA裂解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Diagnostic conferences : january-june 2006. Summary of recent deal activity. An improved method of elimination of DNA from PCR reagents. Touch-down reverse transcriptase-PCR detection of IgV(H) rearrangement and Sybr-Green-based real-time RT-PCR quantitation of minimal residual disease in patients with chronic lymphocytic leukemia. Instability of Trypanosoma cruzi DNA in blood lysates: importance for PCR DNA-based diagnosis.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1