3D deep convolutional neural network segmentation model for precipitate and porosity identification in synchrotron X-ray tomograms.

IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Journal of Synchrotron Radiation Pub Date : 2022-09-01 Epub Date: 2022-07-29 DOI:10.1107/S1600577522006816
S Gaudez, M Ben Haj Slama, A Kaestner, M V Upadhyay
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引用次数: 1

Abstract

New developments at synchrotron beamlines and the ongoing upgrades of synchrotron facilities allow the possibility to study complex structures with a much better spatial and temporal resolution than ever before. However, the downside is that the data collected are also significantly larger (more than several terabytes) than ever before, and post-processing and analyzing these data is very challenging to perform manually. This issue can be solved by employing automated methods such as machine learning, which show significantly improved performance in data processing and image segmentation than manual methods. In this work, a 3D U-net deep convolutional neural network (DCNN) model with four layers and base-8 characteristic features has been developed to segment precipitates and porosities in synchrotron transmission X-ray micrograms. Transmission X-ray microscopy experiments were conducted on micropillars prepared from additively manufactured 316L steel to evaluate precipitate information. After training the 3D U-net DCNN model, it was used on unseen data and the prediction was compared with manual segmentation. A good agreement was found between both segmentations. An ablation study was performed and revealed that the proposed model showed better statistics than other models with lower numbers of layers and/or characteristic features. The proposed model is able to segment several hundreds of gigabytes of data in a few minutes and could be applied to other materials and tomography techniques. The code and the fitted weights are made available with this paper for any interested researcher to use for their needs (https://github.com/manasvupadhyay/erc-gamma-3D-DCNN).

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三维深度卷积神经网络分割模型在同步加速器x射线层析成像中的沉淀和孔隙度识别。
同步加速器光束线的新发展和同步加速器设施的持续升级使得研究复杂结构具有比以往更好的空间和时间分辨率成为可能。然而,缺点是收集的数据也比以前大得多(超过几tb),并且手动执行这些数据的后处理和分析非常具有挑战性。这个问题可以通过采用机器学习等自动化方法来解决,机器学习在数据处理和图像分割方面的性能比人工方法有显著提高。在这项工作中,开发了一个具有四层和基数8特征的3D U-net深度卷积神经网络(DCNN)模型,以分割同步加速器透射x射线微米图中的沉淀和孔隙。采用透射x射线显微镜对增材制造的316L钢制备的微柱进行了实验,以评价沉淀信息。三维U-net DCNN模型训练完成后,应用于未见数据,并与人工分割进行预测对比。在这两个部分之间发现了很好的一致。消融研究表明,该模型比其他具有更少层数和/或特征的模型具有更好的统计性能。所提出的模型能够在几分钟内分割几百gb的数据,并且可以应用于其他材料和断层扫描技术。本文提供了代码和拟合的权重,任何感兴趣的研究人员都可以根据需要使用(https://github.com/manasvupadhyay/erc-gamma-3D-DCNN)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
5.10
自引率
12.00%
发文量
289
审稿时长
4-8 weeks
期刊介绍: Synchrotron radiation research is rapidly expanding with many new sources of radiation being created globally. Synchrotron radiation plays a leading role in pure science and in emerging technologies. The Journal of Synchrotron Radiation provides comprehensive coverage of the entire field of synchrotron radiation and free-electron laser research including instrumentation, theory, computing and scientific applications in areas such as biology, nanoscience and materials science. Rapid publication ensures an up-to-date information resource for scientists and engineers in the field.
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