Complete genome sequence of Microbulbifer sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia.

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-07-06 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0248-0

Tsu Horng Moh, Nyok-Sean Lau, Go Furusawa, Al-Ashraf Abdullah Amirul

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引用次数: 12

Abstract

Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially new species of genus Microbulbifer. Here we describe its features and present its complete genome sequence with annotation. The genome sequence is 3.86 Mb in size with GC content of 58.85%, harbouring 3313 protein coding genes and 92 RNA genes. A total of 71 genes associated with carbohydrate active enzymes were found using dbCAN. Ectoine biosynthetic genes, ectABC operon and ask_ect were detected using antiSMASH 3.0. Cell shape determination genes, mreBCD operon, rodA and rodZ were annotated, congruent with the rod-coccus cell cycle of the strain CCB-MM1. In addition, putative mreBCD operon regulatory gene, bolA was detected, which might be associated with the regulation of rod-coccus cell cycle observed from the strain.

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马来西亚马唐红树林嗜盐菌Microbulbifer sp. CCB-MM1的全基因组序列

Microbulbifer sp. CCB-MM1是一种从马来西亚马塘红树林河口沉积物中分离出来的嗜盐菌。基于16S rRNA基因序列分析，菌株CCB-MM1是一种潜在新种。本文对其特征进行了描述，并对其全基因组序列进行了注释。基因组全长3.86 Mb, GC含量58.85%，包含3313个蛋白质编码基因和92个RNA基因。利用dbCAN共发现71个与碳水化合物活性酶相关的基因。应用antiSMASH 3.0检测Ectoine生物合成基因、ectABC操纵子和ask_ect。细胞形状决定基因，mreBCD操纵子，rodA和rodZ被注释，与菌株CCB-MM1的杆状球菌细胞周期一致。此外，还检测到推测的mreBCD操纵子调控基因bolA，该基因可能与该菌株对棒球菌细胞周期的调控有关。

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