Complete genome sequence of Pseudomonas corrugata strain RM1-1-4, a stress protecting agent from the rhizosphere of an oilseed rape bait plant.

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-11-09 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0278-7
Christin Zachow, Henry Müller, Christina M Laireiter, Ralf Tilcher, Gabriele Berg
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引用次数: 5

Abstract

10.1601/nm.2592 strain RM1-1-4 is a rhizosphere colonizer of oilseed rape. A previous study has shown that this motile, Gram-negative, non-sporulating bacterium is an effective stress protecting and biocontrol agent, which protects their hosts against abiotic and biotic stresses. Here, we announce and describe the complete genome sequence of P. corrugata RM1-1-4 consisting of a single 6.1 Mb circular chromosome that encodes 5189 protein coding genes and 85 RNA-only encoding genes. Genome analysis revealed genes predicting functions such as detoxifying mechanisms, stress inhibitors, exoproteases, lipoproteins or volatile components as well as rhizobactin siderophores and spermidine. Further analysis of its genome will help to identify traits promising for stress protection, biocontrol and plant growth promotion properties.

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油菜诱捕植物根际胁迫保护剂罗氏假单胞菌RM1-1-4的全基因组序列。
10.1601 / nm。2592菌株RM1-1-4是油菜根际定植菌。先前的研究表明,这种可运动的革兰氏阴性非孢子菌是一种有效的应激保护和生物防治剂,可以保护其宿主免受非生物和生物胁迫。在这里,我们宣布并描述了瓦楞纸藻RM1-1-4的完整基因组序列,该序列由一条6.1 Mb的环状染色体组成,该染色体编码5189个蛋白质编码基因和85个仅rna编码基因。基因组分析揭示了预测功能的基因,如解毒机制、应激抑制剂、外蛋白酶、脂蛋白或挥发性成分以及根瘤菌蛋白、铁载体和亚精胺。对其基因组的进一步分析将有助于确定具有胁迫保护、生物防治和促进植物生长特性的性状。
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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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