Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-11-15 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0279-6
Patrik D'haeseleer, Jackson Z Lee, Leslie Prufert-Bebout, Luke C Burow, Angela M Detweiler, Peter K Weber, Ulas Karaoz, Eoin L Brodie, Tijana Glavina Del Rio, Susannah G Tringe, Brad M Bebout, Jennifer Pett-Ridge
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引用次数: 4

Abstract

Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes them of interest from a biotechnological and bioenergy perspective. Samples of an intertidal microbial mat from the Elkhorn Slough estuary in Monterey Bay, California, were transplanted to a greenhouse at NASA Ames Research Center to study a 24-h diel cycle, in the presence or absence of molybdate (which inhibits biohydrogen consumption by sulfate reducers). Here, we present metagenomic analyses of four samples that will be used as references for future metatranscriptomic analyses of this diel time series.

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加州Elkhorn Slough潮间带高盐微生物垫的宏基因组学分析,含和不含钼酸盐。
蓝藻垫是一种层状微生物生态系统,发生在高度多样化的环境中,可能为地球上的早期生命提供一种可能的模式。它们生产氢的能力也使它们从生物技术和生物能源的角度引起了人们的兴趣。来自加州蒙特利湾埃尔克霍恩河口的潮间带微生物垫样本被移植到美国宇航局艾姆斯研究中心的温室中,研究在存在或不存在钼酸盐(钼酸盐抑制硫酸盐还原剂的生物氢消耗)的情况下,24小时的昼夜循环。在这里,我们提出了四个样本的宏基因组分析,这将作为未来对这一时间序列的宏转录组分析的参考。
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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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