Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field.

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-12-16 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0296-5
Nils-Kåre Birkeland, Peter Schönheit, Lianna Poghosyan, Anne Fiebig, Hans-Peter Klenk
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引用次数: 14

Abstract

Archaeoglobus fulgidus is the type species of genus Archaeoglobus Stetter 1998, a hyperthermophilic sulfate reducing group within the Archaeoglobi class of the euryarchaeota phylum. Members of this genus grow heterotrophically or chemolithoautotrophically with sulfate or thiosulfate as electron acceptors. Except for A. fulgidus strain 7324 and the candidate species "Archaeoglobus lithotrophicus", which both originate from deep oil-fields, the other members of this genus have been recovered from marine hydrothermal systems. Here we describe the features of the A. fulgidus strain 7324 genome as compared to the A. fulgidus VC16 type strain. The 2.3 Mbp genome sequence of strain 7324 shares about 93.5% sequence identity with that of strain VC16T but is about 138 Kbp longer, which is mostly due to two large 'insertions' carrying one extra cdc6 (cell-cycle control protein 6) gene, extra CRISPR elements and mobile genetic elements, a high-GC ncRNA gene (hgcC) and a large number of hypothetical gene functions. A comparison with four other Archaeoglobus spp. genomes identified 1001 core Archaeoglobus genes and more than 2900 pan-genome orthologous genes.

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北海油田嗜热古菌硫酸盐还原菌——富氏古球菌7324株全基因组序列分析
始祖舌藻是始祖舌藻属Stetter 1998的模式种,始祖舌藻属是euryarchaeota门始祖舌藻纲中的一个超嗜热硫酸盐还原群。本属的成员以硫酸盐或硫代硫酸盐作为电子受体进行异养或化能自养生长。除A. fulgidus菌株7324和候选种“Archaeoglobus lithotrophicus”均来自深层油田外,该属其他成员均来自海洋热液系统。在这里,我们描述了A. fulgidus菌株7324基因组与A. fulgidus VC16型菌株的特征。菌株7324的基因组序列为2.3 Mbp,与菌株VC16T的序列一致性约为93.5%,但长度约为138 Kbp,这主要是由于两个大“插入”携带了一个额外的cdc6(细胞周期控制蛋白6)基因、额外的CRISPR元件和移动遗传元件、一个高gc ncRNA基因(hgcC)和大量假设的基因功能。通过与其他4种古舌鸟基因组的比较,鉴定出1001个核心古舌鸟基因和2900多个泛基因组同源基因。
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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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