Short genome report of cellulose-producing commensal Escherichia coli 1094.

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2018-05-09 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0316-0
Joaquin Bernal-Bayard, Laura Gomez-Valero, Aimee Wessel, Varun Khanna, Christiane Bouchier, Jean-Marc Ghigo
{"title":"Short genome report of cellulose-producing commensal <i>Escherichia coli</i> 1094.","authors":"Joaquin Bernal-Bayard,&nbsp;Laura Gomez-Valero,&nbsp;Aimee Wessel,&nbsp;Varun Khanna,&nbsp;Christiane Bouchier,&nbsp;Jean-Marc Ghigo","doi":"10.1186/s40793-018-0316-0","DOIUrl":null,"url":null,"abstract":"<p><p>Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In <i>Escherichia coli</i> and many <i>Betaproteobacteria</i> and <i>Gammaproteobacteria</i> cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain <i>E. coli</i> 1094 and compare it with five other closely related genomes within <i>E. coli</i> phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several <i>E. coli</i> strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"13 ","pages":"13"},"PeriodicalIF":0.0000,"publicationDate":"2018-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-018-0316-0","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-018-0316-0","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2018/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 2

Abstract

Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain E. coli 1094 and compare it with five other closely related genomes within E. coli phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several E. coli strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000.

Abstract Image

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
产纤维素共生大肠杆菌1094的短基因组报告。
细菌表面定植和生物膜的形成通常依赖于细胞外聚合物基质的产生,这种基质介导细胞-细胞和细胞-表面接触。在大肠杆菌和许多Betaproteobacteria和Gammaproteobacteria中,纤维素通常是细胞外基质的主要成分。在这里,我们报告了产纤维素菌株大肠杆菌1094的完整基因组序列,并将其与大肠杆菌a系统发育群中其他五个密切相关的基因组进行了比较。我们对负责纤维素生物合成的基因编码区域进行了比较分析,并讨论了可能导致几种大肠杆菌菌株失去这一重要适应优势的变化。数据保存:带注释的基因组序列已保存在欧洲核苷酸档案馆,登录号为PRJEB21000。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
期刊最新文献
Complete genome of Rhizobium leguminosarum Norway, an ineffective Lotus micro-symbiont. Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains. High-quality-draft genome sequence of the heavy metal resistant and exopolysaccharides producing bacterium Mucilaginibacter pedocola TBZ30T. Complete genome sequence of Arcticibacterium luteifluviistationis SM1504T, a cytophagaceae bacterium isolated from Arctic surface seawater. The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1