On the use of min-max combination of biomarkers to maximize the partial area under the ROC curve.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2019-01-01 Epub Date: 2019-02-03 DOI:10.1155/2019/8953530
Hua Ma, Susan Halabi, Aiyi Liu
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引用次数: 4

Abstract

Background: Evaluation of diagnostic assays and predictive performance of biomarkers based on the receiver operating characteristic (ROC) curve and the area under the ROC curve (AUC) are vital in diagnostic and targeted medicine. The partial area under the curve (pAUC) is an alternative metric focusing on a range of practical and clinical relevance of the diagnostic assay. In this article, we adopt and extend the min-max method to the estimation of the pAUC when multiple continuous scaled biomarkers are available and compare the performances of our proposed approach with existing approaches via simulations.

Methods: We conducted extensive simulation studies to investigate the performance of different methods for the combination of biomarkers based on their abilities to produce the largest pAUC estimates. Data were generated from different multivariate distributions with equal and unequal variance-covariance matrices. Different shapes of the ROC curves, false positive fraction ranges, and sample size configurations were considered. We obtained the mean and standard deviation of the pAUC estimates through re-substitution and leave-one-pair-out cross validation.

Results: Our results demonstrate that the proposed method provides the largest pAUC estimates under the following three important practical scenarios: (1) multivariate normally distributed data for non-diseased and diseased participants have unequal variance-covariance matrices; or (2) the ROC curves generated from individual biomarker are relative close regardless of the latent normality distributional assumption; or (3) the ROC curves generated from individual biomarker have straight-line shapes.

Conclusions: The proposed method is robust and investigators are encouraged to use this approach in the estimation of the pAUC for many practical scenarios.

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关于使用最小-最大生物标记物组合来最大化ROC曲线下的部分面积。
背景:基于受试者工作特征(ROC)曲线和ROC曲线下面积(AUC)评估诊断分析和生物标志物的预测性能在诊断和靶向医学中至关重要。曲线下部分面积(pAUC)是另一种度量,侧重于诊断分析的一系列实际和临床相关性。在本文中,我们采用并扩展了最小-最大方法来估计多个连续缩放的生物标记物时的pac,并通过仿真比较了我们提出的方法与现有方法的性能。方法:我们进行了广泛的模拟研究,根据生物标志物组合的不同方法产生最大pac估计值的能力来研究它们的性能。数据来自方差-协方差矩阵相等和不相等的不同多元分布。考虑了不同形状的ROC曲线、假阳性分数范围和样本量配置。我们通过重新替换和留下一对的交叉验证得到了pac估计的均值和标准差。结果表明,本文提出的方法在以下三种重要的实际情况下提供了最大的pac估计:(1)非患病和患病参与者的多元正态分布数据具有不等的方差-协方差矩阵;或(2)无论潜在正态分布假设如何,个体生物标志物生成的ROC曲线都相对接近;(3)个体生物标志物生成的ROC曲线呈直线形状。结论:所提出的方法是稳健的,鼓励研究者在许多实际情况下使用这种方法来估计pac。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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