Time-of-flight secondary ion mass spectrometry analysis of hair samples using unsupervised artificial neural network.

IF 2.1 4区 医学 Q2 Physics and Astronomy Biointerphases Pub Date : 2020-04-20 DOI:10.1116/6.0000044
Kazuhiro Matsuda, Satoka Aoyagi
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引用次数: 10

Abstract

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is extensively employed for the structural analysis of the outermost surfaces of organic materials, including biological materials, because it provides detailed compositional information and enables high-spatial-resolution chemical mapping. In this study, a combination of TOF-SIMS and data analysis was employed to evaluate biological materials composed of numerous proteins, including unknown ones. To interpret complicated TOF-SIMS data of human hair, an autoencoder, a dimensionality reduction method based on artificial neural networks, was applied. Autoencoders can be used to perform nonlinear analysis; therefore, they are more suitable than principal component analysis (PCA) for analyzing TOF-SIMS data, which are influenced by the matrix effect. As a model sample data, the TOF-SIMS depth profile of human hair, acquired via argon gas cluster ion beam sputtering and Bi3 2+ primary ion beam, was employed. Useful information, including the characteristic distributions of amino acids and permeated surfactants on the outermost surface of the hair, was extracted from the results obtained from the autoencoder. Furthermore, the autoencoder extracted more detailed features than did PCA. Therefore, autoencoders can become a powerful tool for TOF-SIMS data analysis.

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利用无监督人工神经网络进行头发样品的飞行时间二次离子质谱分析。
飞行时间二次离子质谱法(TOF-SIMS)被广泛用于有机材料(包括生物材料)最外表面的结构分析,因为它提供了详细的成分信息,并实现了高空间分辨率的化学制图。在本研究中,采用TOF-SIMS和数据分析相结合的方法来评估由多种蛋白质组成的生物材料,包括未知蛋白质。为了解释人类头发复杂的TOF-SIMS数据,采用了一种基于人工神经网络的自编码器降维方法。自动编码器可用于执行非线性分析;因此,它们比主成分分析(PCA)更适合分析受矩阵效应影响的TOF-SIMS数据。利用氩气簇离子束溅射和bi32 +一次离子束溅射获得的头发TOF-SIMS深度剖面作为模型样本数据。从自编码器获得的结果中提取了有用的信息,包括氨基酸和渗透表面活性剂在头发最外表面的特征分布。此外,自编码器比PCA提取了更多的细节特征。因此,自动编码器可以成为TOF-SIMS数据分析的有力工具。
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来源期刊
Biointerphases
Biointerphases BIOPHYSICS-MATERIALS SCIENCE, BIOMATERIALS
CiteScore
4.10
自引率
0.00%
发文量
35
审稿时长
>12 weeks
期刊介绍: Biointerphases emphasizes quantitative characterization of biomaterials and biological interfaces. As an interdisciplinary journal, a strong foundation of chemistry, physics, biology, engineering, theory, and/or modelling is incorporated into originated articles, reviews, and opinionated essays. In addition to regular submissions, the journal regularly features In Focus sections, targeted on specific topics and edited by experts in the field. Biointerphases is an international journal with excellence in scientific peer-review. Biointerphases is indexed in PubMed and the Science Citation Index (Clarivate Analytics). Accepted papers appear online immediately after proof processing and are uploaded to key citation sources daily. The journal is based on a mixed subscription and open-access model: Typically, authors can publish without any page charges but if the authors wish to publish open access, they can do so for a modest fee. Topics include: bio-surface modification nano-bio interface protein-surface interactions cell-surface interactions in vivo and in vitro systems biofilms / biofouling biosensors / biodiagnostics bio on a chip coatings interface spectroscopy biotribology / biorheology molecular recognition ambient diagnostic methods interface modelling adhesion phenomena.
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