{"title":"Time-of-flight secondary ion mass spectrometry analysis of hair samples using unsupervised artificial neural network.","authors":"Kazuhiro Matsuda, Satoka Aoyagi","doi":"10.1116/6.0000044","DOIUrl":null,"url":null,"abstract":"<p><p>Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is extensively employed for the structural analysis of the outermost surfaces of organic materials, including biological materials, because it provides detailed compositional information and enables high-spatial-resolution chemical mapping. In this study, a combination of TOF-SIMS and data analysis was employed to evaluate biological materials composed of numerous proteins, including unknown ones. To interpret complicated TOF-SIMS data of human hair, an autoencoder, a dimensionality reduction method based on artificial neural networks, was applied. Autoencoders can be used to perform nonlinear analysis; therefore, they are more suitable than principal component analysis (PCA) for analyzing TOF-SIMS data, which are influenced by the matrix effect. As a model sample data, the TOF-SIMS depth profile of human hair, acquired via argon gas cluster ion beam sputtering and Bi<sub>3</sub> <sup>2+</sup> primary ion beam, was employed. Useful information, including the characteristic distributions of amino acids and permeated surfactants on the outermost surface of the hair, was extracted from the results obtained from the autoencoder. Furthermore, the autoencoder extracted more detailed features than did PCA. Therefore, autoencoders can become a powerful tool for TOF-SIMS data analysis.</p>","PeriodicalId":49232,"journal":{"name":"Biointerphases","volume":"15 2","pages":"021013"},"PeriodicalIF":2.1000,"publicationDate":"2020-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1116/6.0000044","citationCount":"10","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biointerphases","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1116/6.0000044","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Physics and Astronomy","Score":null,"Total":0}
引用次数: 10
Abstract
Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is extensively employed for the structural analysis of the outermost surfaces of organic materials, including biological materials, because it provides detailed compositional information and enables high-spatial-resolution chemical mapping. In this study, a combination of TOF-SIMS and data analysis was employed to evaluate biological materials composed of numerous proteins, including unknown ones. To interpret complicated TOF-SIMS data of human hair, an autoencoder, a dimensionality reduction method based on artificial neural networks, was applied. Autoencoders can be used to perform nonlinear analysis; therefore, they are more suitable than principal component analysis (PCA) for analyzing TOF-SIMS data, which are influenced by the matrix effect. As a model sample data, the TOF-SIMS depth profile of human hair, acquired via argon gas cluster ion beam sputtering and Bi32+ primary ion beam, was employed. Useful information, including the characteristic distributions of amino acids and permeated surfactants on the outermost surface of the hair, was extracted from the results obtained from the autoencoder. Furthermore, the autoencoder extracted more detailed features than did PCA. Therefore, autoencoders can become a powerful tool for TOF-SIMS data analysis.
期刊介绍:
Biointerphases emphasizes quantitative characterization of biomaterials and biological interfaces. As an interdisciplinary journal, a strong foundation of chemistry, physics, biology, engineering, theory, and/or modelling is incorporated into originated articles, reviews, and opinionated essays. In addition to regular submissions, the journal regularly features In Focus sections, targeted on specific topics and edited by experts in the field. Biointerphases is an international journal with excellence in scientific peer-review. Biointerphases is indexed in PubMed and the Science Citation Index (Clarivate Analytics). Accepted papers appear online immediately after proof processing and are uploaded to key citation sources daily. The journal is based on a mixed subscription and open-access model: Typically, authors can publish without any page charges but if the authors wish to publish open access, they can do so for a modest fee.
Topics include:
bio-surface modification
nano-bio interface
protein-surface interactions
cell-surface interactions
in vivo and in vitro systems
biofilms / biofouling
biosensors / biodiagnostics
bio on a chip
coatings
interface spectroscopy
biotribology / biorheology
molecular recognition
ambient diagnostic methods
interface modelling
adhesion phenomena.