Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species

IF 14.1 1区 生物学 Q1 MYCOLOGY Studies in Mycology Pub Date : 2020-03-01 DOI:10.1016/j.simyco.2020.05.002
J. Houbraken , S. Kocsubé , C.M. Visagie , N. Yilmaz , X.-C. Wang , M. Meijer , B. Kraak , V. Hubka , K. Bensch , R.A. Samson , J.C. Frisvad
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Finally, a comprehensive list of accepted species in the <em>Eurotiales</em> is given. The classification of the <em>Eurotiales</em> at family and genus level is traditionally based on phenotypic characters, and this classification has since been challenged using sequence-based approaches. Here, we re-evaluated the relationships between families and genera of the <em>Eurotiales</em> using a nine-gene sequence dataset. Based on this analysis, the new family <em>Penicillaginaceae</em> is introduced and four known families are accepted: <em>Aspergillaceae</em>, <em>Elaphomycetaceae</em>, <em>Thermoascaceae</em> and <em>Trichocomaceae</em>. The <em>Eurotiales</em> includes 28 genera: 15 genera are accommodated in the <em>Aspergillaceae</em> (<em>Aspergillago</em>, <em>Aspergillus</em>, <em>Evansstolkia</em>, <em>Hamigera</em>, <em>Leiothecium</em>, <em>Monascus</em>, <em>Penicilliopsis</em>, <em>Penicillium</em>, <em>Phialomyces</em>, <em>Pseudohamigera</em>, <em>Pseudopenicillium</em>, <em>Sclerocleista</em>, <em>Warcupiella</em>, <em>Xerochrysium</em> and <em>Xeromyces</em>), eight in the <em>Trichocomaceae</em> (<em>Acidotalaromyces</em>, <em>Ascospirella</em>, <em>Dendrosphaera</em>, <em>Rasamsonia</em>, <em>Sagenomella</em>, <em>Talaromyces</em>, <em>Thermomyces</em>, <em>Trichocoma</em>), two in the <em>Thermoascaceae</em> (<em>Paecilomyces</em>, <em>Thermoascus</em>) and one in the <em>Penicillaginaceae</em> (<em>Penicillago</em>). The classification of the <em>Elaphomycetaceae</em> was not part of this study, but according to literature two genera are present in this family (<em>Elaphomyces</em> and <em>Pseudotulostoma</em>). The use of an infrageneric classification system has a long tradition in <em>Aspergillus</em> and <em>Penicillium</em>. Most recent taxonomic studies focused on the sectional level, resulting in a well-established sectional classification in these genera. In contrast, a series classification in <em>Aspergillus</em> and <em>Penicillium</em> is often outdated or lacking, but is still relevant, <em>e.g.</em>, the allocation of a species to a series can be highly predictive in what functional characters the species might have and might be useful when using a phenotype-based identification. The majority of the series in <em>Aspergillus</em> and <em>Penicillium</em> are invalidly described and here we introduce a new series classification. 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These numbers increased significantly, and the current list includes 446 <em>Aspergillus</em> (32 % increase), 483 <em>Penicillium</em> (36 % increase) and 171 <em>Talaromyces</em> (94 % increase) species, showing the large diversity and high interest in these genera. We expanded this list with all genera and species belonging to the <em>Eurotiales</em> (except those belonging to <em>Elaphomycetaceae</em>). 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引用次数: 262

Abstract

The Eurotiales is a relatively large order of Ascomycetes with members frequently having positive and negative impact on human activities. Species within this order gain attention from various research fields such as food, indoor and medical mycology and biotechnology. In this article we give an overview of families and genera present in the Eurotiales and introduce an updated subgeneric, sectional and series classification for Aspergillus and Penicillium. Finally, a comprehensive list of accepted species in the Eurotiales is given. The classification of the Eurotiales at family and genus level is traditionally based on phenotypic characters, and this classification has since been challenged using sequence-based approaches. Here, we re-evaluated the relationships between families and genera of the Eurotiales using a nine-gene sequence dataset. Based on this analysis, the new family Penicillaginaceae is introduced and four known families are accepted: Aspergillaceae, Elaphomycetaceae, Thermoascaceae and Trichocomaceae. The Eurotiales includes 28 genera: 15 genera are accommodated in the Aspergillaceae (Aspergillago, Aspergillus, Evansstolkia, Hamigera, Leiothecium, Monascus, Penicilliopsis, Penicillium, Phialomyces, Pseudohamigera, Pseudopenicillium, Sclerocleista, Warcupiella, Xerochrysium and Xeromyces), eight in the Trichocomaceae (Acidotalaromyces, Ascospirella, Dendrosphaera, Rasamsonia, Sagenomella, Talaromyces, Thermomyces, Trichocoma), two in the Thermoascaceae (Paecilomyces, Thermoascus) and one in the Penicillaginaceae (Penicillago). The classification of the Elaphomycetaceae was not part of this study, but according to literature two genera are present in this family (Elaphomyces and Pseudotulostoma). The use of an infrageneric classification system has a long tradition in Aspergillus and Penicillium. Most recent taxonomic studies focused on the sectional level, resulting in a well-established sectional classification in these genera. In contrast, a series classification in Aspergillus and Penicillium is often outdated or lacking, but is still relevant, e.g., the allocation of a species to a series can be highly predictive in what functional characters the species might have and might be useful when using a phenotype-based identification. The majority of the series in Aspergillus and Penicillium are invalidly described and here we introduce a new series classification. Using a phylogenetic approach, often supported by phenotypic, physiologic and/or extrolite data, Aspergillus is subdivided in six subgenera, 27 sections (five new) and 75 series (73 new, one new combination), and Penicillium in two subgenera, 32 sections (seven new) and 89 series (57 new, six new combinations). Correct identification of species belonging to the Eurotiales is difficult, but crucial, as the species name is the linking pin to information. Lists of accepted species are a helpful aid for researchers to obtain a correct identification using the current taxonomic schemes. In the most recent list from 2014, 339 Aspergillus, 354 Penicillium and 88 Talaromyces species were accepted. These numbers increased significantly, and the current list includes 446 Aspergillus (32 % increase), 483 Penicillium (36 % increase) and 171 Talaromyces (94 % increase) species, showing the large diversity and high interest in these genera. We expanded this list with all genera and species belonging to the Eurotiales (except those belonging to Elaphomycetaceae). The list includes 1 187 species, distributed over 27 genera, and contains MycoBank numbers, collection numbers of type and ex-type cultures, subgenus, section and series classification data, information on the mode of reproduction, and GenBank accession numbers of ITS, beta-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) gene sequences.

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曲霉、青霉、Talaromyces及其相关属(Eurotiales)的分类:科、属、亚属、科、系和种概述。
子囊菌是子囊菌中一个较大的目,其成员经常对人类活动产生积极和消极的影响。该目植物在食品、室内和医学真菌学、生物技术等研究领域受到广泛关注。在这篇文章中,我们给出的家庭和属目前在欧洲和介绍一个更新的亚属,分支和系列分类曲霉和青霉菌的概述。最后,给出了一份完整的已被认可的欧洲科物种名单。在科和属水平上,eurotiale的分类传统上是基于表型特征的,并且这种分类已经受到基于序列的方法的挑战。在这里,我们使用9个基因序列数据集重新评估了欧罗巴科和属之间的关系。在此基础上,引入了新科青霉菌科,并接受了已知的4个科:曲霉菌科、Elaphomycetaceae、热霉菌科和Trichocomaceae。欧洲科包括28个属:曲霉菌科有15个属(曲霉菌、曲霉菌、Evansstolkia、Hamigera、Leiothecium、Monascus、青霉菌、青霉菌、philalomyces、Pseudohamigera、Pseudopenicillium、sclclerleista、Warcupiella、xerochryum和Xeromyces),毛霉菌科有8个属(Acidotalaromyces、ascospiella、Dendrosphaera、Rasamsonia、Sagenomella、Talaromyces、thermoyces、Trichocoma),热曲霉菌科有2个属(Paecilomyces、Thermoascus),青霉科有1个属(Penicillago)。本研究未涉及Elaphomycetaceae的分类,但据文献报道,该科有Elaphomyces和Pseudotulostoma两属。在曲霉和青霉菌中,使用属内分类系统有着悠久的传统。最近的分类学研究主要集中在分节水平上,在这些属中建立了一个完善的分节分类。相比之下,曲霉和青霉菌的系列分类通常是过时的或缺乏的,但仍然是相关的,例如,一个物种的分配到一个系列可以高度预测物种可能具有的功能特征,并且在使用基于表型的鉴定时可能是有用的。大多数系列的曲霉和青霉菌是无效的描述,在这里我们介绍一个新的系列分类。使用系统发育方法,通常由表型,生理和/或外向性数据支持,曲霉被细分为6个亚属,27个区段(5个新)和75个系列(73个新,1个新组合),青霉被细分为2个亚属,32个区段(7个新)和89个系列(57个新,6个新组合)。正确识别属于eurotiale的物种是困难的,但至关重要,因为物种名称是信息的链接针。被接受的物种列表有助于研究人员利用现有的分类方案获得正确的鉴定。在2014年的最新名单中,有339种曲霉、354种青霉和88种塔尔香霉被接受。目前已收录的曲霉属446种(增加32%),青霉属483种(增加36%),Talaromyces属171种(增加94%),显示出这些属的多样性和高度关注。我们扩大了这个列表,包括所有属于欧洲的属和种(除了那些属于Elaphomycetaceae)。该清单包括1 187种,分布于27个属,包含MycoBank编号、型和非型培养物收集编号、亚属、切片和系列分类数据、繁殖方式信息以及ITS、β -微管蛋白(BenA)、钙调蛋白(CaM)和RNA聚合酶II第二大亚基(RPB2)基因序列的GenBank登录号。
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来源期刊
Studies in Mycology
Studies in Mycology 生物-真菌学
CiteScore
35.60
自引率
3.00%
发文量
7
期刊介绍: The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content. Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.
期刊最新文献
What are the 100 most cited fungal genera? The genus Fomitopsis (Polyporales, Basidiomycota) reconsidered. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. Family matters inside the order Agaricales: systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species
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