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New Mucorales from opposite ends of the world. 来自世界两端的新毛霉菌。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-09-18 DOI: 10.3114/sim.2024.109.04
T T T Nguyen, A L C M de A Santiago, J E Hallsworth, T R L Cordeiro, K Voigt, P M Kirk, P W Crous, M A M Júnior, C Elsztein, H B Lee

The Mucorales is a group of ancient fungi with global distribution. In the current study we accessed mucoralean fungi isolated from two countries on opposite sides of the Earth and in different hemispheres: South Korea and Brazil. Mucorales isolates were obtained from freshwater, soil, invertebrates, and fruit seeds and identified using phenotypic techniques combined with the DNA sequence data. These analyses revealed 15 new species including one that we affiliated to a newly proposed genus, Neofennellomyces. Names proposed for these 15 new species are Absidia cheongyangensis, A. fluvii, A. kunryangriensis, A. paracylindrospora, A. tarda, A. variiprojecta, A. variispora, Backusella varians, Mucor albicolonia, M. aurantiacus, M. cryophilus, M. glutinatus, M. paraorantomantidis, M. timomeni, and Neofennellomyces jeongsukae. Of these new species, 12 were isolated from South Korea: A. cheongyangensis, A. fluvii, A. kunryangriensis, A. paracylindrospora, B. varians, M. albicolonia, M. aurantiacus, M. cryophilus, M. glutinatus, M. paraorantomantidis, M. timomeni, and N. jeongsukae, and three from Brazil: A. tarda, A. variiprojecta, and A. variispora. Niche specificity of these fungi is discussed including newly recorded invertebrate hosts and a new geographic distribution for species of Backusella, Circinella, Cunninghamella, and Mucor. Given these findings, we provide an inventory of Mucorales. Taxonomic novelties: New genus: Neofennellomyces Hyang B. Lee & T.T.T. Nguyen. New species: Absidia cheongyangensis Hyang B. Lee & T.T.T. Nguyen, Absidia fluvii Hyang B. Lee, A.L. Santiago, P.M. Kirk, K. Voigt & T.T.T. Nguyen, Absidia kunryangriensis Hyang B. Lee & T.T.T. Nguyen, Absidia paracylindrospora Hyang B. Lee & T.T.T. Nguyen, Absidia tarda T.R.L. Cordeiro, Hyang B. Lee & A.L. Santiago, Absidia variiprojecta T.R.L. Cordeiro & A.L. Santiago, Absidia variispora T.R.L. Cordeiro & A.L. Santiago, Backusella varians Hyang B. Lee & T.T.T. Nguyen, Mucor aurantiacus Hyang B. Lee & T.T.T. Nguyen, Mucor cryophilus Hyang B. Lee & T.T.T. Nguyen, Mucor albicolonia Hyang B. Lee & T.T.T. Nguyen, Mucor glutinatus Hyang B. Lee & T.T.T. Nguyen, Mucor paraorantomantidis Hyang B. Lee & T.T.T. Nguyen, Mucor timomeni Hyang B. Lee & T.T.T. Nguyen, Neofennellomyces jeongsukae Hyang B. Lee & T.T.T. Nguyen. Citation: Nguyen TTT, de A. Santiago ALCM, Hallsworth JE, Cordeiro TRL, Voigt K, Kirk PM, Crous PW, Júnior MAM, Elsztein C, Lee HB (2024). New Mucorales from opposite ends of the world. Studies in Mycology 109: 273-321. doi: 10.3114/sim.2024.109.04.

Mucorales是一组分布于全球的古老真菌。在目前的研究中,我们接触了从地球两端和不同半球的两个国家分离出来的mucoralean真菌:韩国和巴西。从淡水、土壤、无脊椎动物和水果种子中分离得到Mucorales菌株,并利用表型技术结合DNA序列数据进行鉴定。这些分析揭示了15个新种,其中一个我们隶属于一个新提出的属,Neofennellomyces。这15个新种的建议名称为:青阳Absidia cheongyangensis、A. fluvii、A. kunryangriensis、A. paracylindrospora、A. tarda、A. variiprojecta、A. variispora、Backusella varians、Mucor albicolonia、M. aurantiacus、M. cryophilus、M. glutinatus、M. paraantomantidis、M. timomeni和neofenellomyces jeongsukae。在这些新种中,有12种是从韩国分离出来的:cheongyangensis、A. fluvii、A. kunryangriensis、A. paracylindrospora、B. varians、M. albicolonia、M. aurantiacus、M. cryophilus、M. glutinatus、M. paraorantomantidis、M. timomeni和N. jeongsukae; 3种是从巴西分离出来的:A. tarda、A. variiprojecta和A. variispora。讨论了这些真菌的生态位特异性,包括新记录的无脊椎宿主和Backusella, Circinella, Cunninghamella和Mucor种的新地理分布。鉴于这些发现,我们提供了Mucorales的清单。分类新异:新属:Neofennellomyces Hyang B. Lee & T.T.T. Nguyen。新种:Absidia cheongyangensis Hyang B. Lee & T.T.T. Nguyen, Absidia fluvii Hyang B. Lee, A.L. Santiago, P.M.Kirk, K. Voigt & T.T.T. Nguyen, kunryangriensis hyb . Lee & T.T.T. Nguyen, Absidia paracylindrospora hyb . Lee & T.T.T. Nguyen, Absidia tarda T.R.L. Cordeiro & A.L. Santiago, Absidia variiprojecta T.R.L. Cordeiro & A.L. Santiago, Absidia variispora T.R.L. Cordeiro & A.L. Santiago, Backusella varians hyb . Lee & T.T.T. Nguyen, aurantiacus hyb . Lee & T.T.T. Nguyen, Mucor cryophilus hyb . Lee & t.t.t.t. Nguyen,白毛霉香B. Lee & ttt . Nguyen,粘毛霉香B. Lee & ttt . Nguyen,副抗毛霉香B. Lee & ttt . Nguyen,霉霉香B. Lee & ttt . Nguyen, Neofennellomyces jeongsukae香B. Lee & ttt . Nguyen。引用本文:Nguyen TTT, de A. Santiago ALCM, Hallsworth JE, Cordeiro TRL, Voigt K, Kirk PM, Crous PW, Júnior MAM, Elsztein C, Lee HB(2024)。来自世界两端的新毛霉菌。真菌学研究109:273-321。doi: 10.3114 / sim.2024.109.04。
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引用次数: 0
Diaporthe species on palms - integrative taxonomic approach for species boundaries delimitation in the genus Diaporthe, with the description of D. pygmaeae sp. nov. 棕榈上的散叶蝇——散叶蝇属种界划分的综合分类学方法,并附pygmaeae sp. nov的描述。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-10-23 DOI: 10.3114/sim.2024.109.08
D S Pereira, A J L Phillips
<p><p>The application of traditional morphological and ecological species concepts to closely related, asexual fungal taxa is challenging due to the lack of distinctive morphological characters and frequent cosmopolitan and plurivorous behaviour. As a result, multilocus sequence analysis (MLSA) has become a powerful and widely used tool to recognise and delimit independent evolutionary lineages (IEL) in fungi. However, MLSA can mask discordances in individual gene trees and lead to misinterpretation of speciation events. This phenomenon has been extensively documented in <i>Diaporthe</i>, and species identifications in this genus remains an ongoing challenge. However, the accurate delimitation of <i>Diaporthe</i> species is critical as the genus encompasses several cosmopolitan pathogens that cause serious diseases on many economically important plant hosts. In this regard, following a survey of palm leaf spotting fungi in Lisbon, Portugal, <i>Diaporthe</i> species occurring on <i>Arecaceae</i> hosts were used as a case study to implement an integrative taxonomic approach for a reliable species identification in the genus. Molecular analyses based on the genealogical concordance phylogenetic species recognition (GCPSR) and DNA-based species delimitation methods revealed that speciation events in the genus have been highly overestimated. Most IEL identified by the GCPSR were also recognised by Poisson tree processes (PTP) coalescent-based methods, which indicated that phylogenetic lineages in <i>Diaporthe</i> are likely influenced by incomplete lineage sorting (ILS) and reticulation events. Furthermore, the recognition of genetic recombination signals and the evaluation of genetic variability based on sequence polymorphisms reinforced these hypotheses. New clues towards the intraspecific variation in the common loci used for phylogenetic inference of <i>Diaporthe</i> species are discussed. These results demonstrate that intraspecific variability has often been used as an indicator to introduce new species in <i>Diaporthe</i>, which has led to a proliferation of species names in the genus. Based on these data, 53 species are reduced to synonymy with 18 existing <i>Diaporthe</i> species, and a new species, <i>D. pygmaeae</i>, is introduced. Thirteen new plant host-fungus associations are reported, all of which represent new host family records for <i>Arecaceae</i>. This study has recognised and resolved a total of 14 valid <i>Diaporthe</i> species associated with <i>Arecaceae</i> hosts worldwide, some of which are associated with disease symptoms. This illustrates the need for more systematic research to examine the complex of <i>Diaporthe</i> taxa associated with palms and determine their potential pathogenicity. By implementing a more rational framework for future studies on species delimitation in <i>Diaporthe</i>, this study provides a solid foundation to stabilise the taxonomy of species in the genus. Guidelines for species recognition, definit
由于缺乏独特的形态特征和频繁的世界性和多食性行为,将传统的形态学和生态学物种概念应用于密切相关的无性真菌分类群是具有挑战性的。因此,多位点序列分析(MLSA)已成为识别和划分真菌独立进化谱系(IEL)的有力工具。然而,MLSA可以掩盖个体基因树的不一致,导致物种形成事件的误解。这种现象在Diaporthe中已被广泛记录,该属的物种鉴定仍然是一个持续的挑战。然而,准确的物种划分是至关重要的,因为该属包含几种世界性的病原体,这些病原体会对许多重要的经济植物宿主造成严重的疾病。在对葡萄牙里斯本棕榈叶斑真菌进行调查后,以发生在槟榔科宿主上的Diaporthe为例,采用综合分类方法对该属进行可靠的物种鉴定。基于家谱一致性、系统发育物种识别(GCPSR)和基于dna的物种划分方法的分子分析表明,该属的物种形成事件被高估了。GCPSR识别的大多数IEL也被泊松树过程(PTP)聚结方法识别,这表明Diaporthe的系统发育谱系可能受到不完全谱系分类(ILS)和网状事件的影响。此外,基因重组信号的识别和基于序列多态性的遗传变异评估也加强了这些假设。讨论了用于物种系统发育推断的常见位点种内变异的新线索。这些结果表明,种内变异性经常被用来作为引入新种的一个指标,这导致了属中物种名称的增殖。在此基础上,将53种与现有的18种Diaporthe归为同义种,并引入了一个新种pygmaeae。报道了13个新的植物寄主-真菌关联,它们都代表了槟榔科寄主家族的新记录。本研究共发现并鉴定了14种与槟榔科寄主相关的有效散斑菌,其中一些与疾病症状有关。这说明需要更系统的研究来检查与棕榈树相关的Diaporthe类群的复合体,并确定其潜在的致病性。本研究为今后Diaporthe属的物种划分研究提供了更为合理的框架,为稳定该属的物种分类奠定了坚实的基础。包括物种识别、定义和鉴定指南。分类新异:新种:pygmaeae Diaporthe Pereira & A.J.L. Phillips。新的同义词:黄斑蝶孟凯和卢明,黄斑蝶田传明和杨庆林,黄斑蝶中国种王素英等,黄斑蝶澳大利亚种R.G. Shivas等,黄斑蝶澳大利亚种谭彦平和R.G. Shivas,黄斑蝶澳大利亚种孟凯和卢明,黄斑蝶中国种田传明和杨庆,黄斑蝶中国种高永华和蔡玲,黄斑蝶中国种董洪辉等,黄斑蝶白永宽和范晓亮等,黄斑蝶中国种陶立德等,黄杨,黄杨,黄杨,黄杨,黄杨,黄杨,黄杨,黄杨,黄杨。Diaporthe fusiformis Jayaward等。王晓明等,全球传代传代孟凯和卢勇,海南传代传代秦阳,香港传代传代R.R. Gomes等,湖北传代传代Dissan。et al ., Diaporthe infecunda水银血压计戈麦斯et al ., Diaporthe italiana Chethana et al ., Diaporthe juglandigena林亭汝王et al ., Diaporthe lagerstroemiae常et al .(中国区)Y.H.高& l . Cai Diaporthe lithocarpi (Y.H.高et al。)Y.H.高& l . Cai Diaporthe lutescens s.t。黄et al ., Diaporthe machili s.t。黄et al ., Diaporthe megabiguttulata罗m . et al ., Diaporthe middletonii R.G.湿婆et al ., Diaporthe morindae罗m . et al ., Diaporthe nannuoshanensis s.t。黄et al .,黑鬼婆罗门。&海德K.D.,卢庆涛&张震,克劳斯&翁明杰。, Diaporthe pimpinellae Abeywickrama等,Diaporthe pseudoinoliveira等,Diaporthe pungensis s.t.t. Huang等,Diaporthe rhodomyrti Tian C.M. & Yang Qin, Diaporthe rosae M.C. Samar。diapthe rumicicola Manawas等,diapthe salicola R.G. Shivas等,diapthe samaneae Monkai & Lumyong, diapthe sub圆柱孢子a S.K. Huang等,diapthe tectonae Doilom等,diapthe theobromatis h Dong等,diapthe thunbergiicola Udayanga & K.D. Hyde, diapthe tuyouyouiae Y.P. Tan等,Diaporthe unshiuensis F. Huang等,Diaporthe vochysiae S.A. Noriler等,Diaporthe西双版纳ensis Hongsanan & K.D. Hyde, Diaporthe xylocarpi M.S. Calabon & E.B.G. Jones, Diaporthe zabaisu yyss & Wang G.P., Diaporthe肇庆ensis M. Luo等。引用本文:Pereira DS, Phillips AJL(2024)。棕榈上的散斑蝶属物种划分的综合分类学方法,附pygmaeae sp. . [j] .真菌学研究,109:487-594。doi: 10.3114 / sim.2024.109.08。
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引用次数: 0
Phylogenetic diversity and morphological characterization of cordycipitaceous species in Taiwan. 台湾冬虫夏草属物种的系统发育多样性及形态特征。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-19 DOI: 10.3114/sim.2024.109.01
W Y Chuang, Y C Lin, B Shrestha, J J Luangsa-Ard, M Stadler, S S Tzean, S Wu, C C Ko, S Y Hsieh, M L Wu, S C Wang, T L Shen, H A Ariyawansa
<p><p>Species classified in <i>Cordycipitaceae</i> (<i>Hypocreales</i>) include multiple entomopathogenic fungi. Numerous changes have recently occurred in the nomenclature of cordycipitaceous fungi due to the single naming system proposed for pleomorphic fungi in 2011. Species of <i>Cordycipitaceae</i> are widely applied as herbal medicines, especially in Asian cultures. However, the diversity of <i>Cordycipitaceae</i> in Taiwan is based on relatively few literature records. Here we conducted a comprehensive survey of this family throughout the island of Taiwan and provided a glimpse of the diversity and distribution patterns. In addition, the present study reassesses the generic and species boundaries of <i>Cordycipitaceae</i> and finally provides an updated phylogenetic overview of <i>Cordyceps</i> and allied genera. Phylogenetic reconstructions using combined ITS, nrLSU, <i>tef1-α</i>, <i>rpb1</i>, and <i>rpb2</i> sequence data, along with morphological features, resulted in 10 novel species: <i>Akanthomyces taiwanicus sp. nov.</i>, <i>Blackwellomyces taiwanensis sp. nov.</i>, <i>Cordyceps hehuanensis sp. nov.</i>, <i>C</i>. <i>locastrae sp. nov.</i>, <i>C</i>. <i>malleiformis sp. nov.</i>, <i>C</i>. <i>pseudorosea sp. nov.</i>, <i>C</i>. <i>siangyangensis sp. nov.</i>, <i>Samsoniella lasiocampidarum sp. nov.</i>, <i>S</i>. <i>yuanzuiensis sp. nov.</i>, and <i>Simplicillium salviniae sp. nov.</i>; and nine new records for Taiwan: <i>A</i>. <i>kanyawimiae</i>, <i>A</i>. <i>muscarius</i>, <i>S</i>. <i>cardinalis</i>, <i>S</i>. <i>hepiali</i>, <i>B</i>. <i>lii</i>, <i>B</i>. <i>medogensis</i>, <i>C</i>. <i>lepidopterorum</i>, <i>C</i>. <i>neopruinosa</i>, and <i>Si</i>. <i>chinense</i>. Furthermore, we provided DNA sequence data of the ex-type strains of <i>C. ninchukispora</i> for the first time and determined the species limits of the taxon. In addition, the present study proposed to synonymize <i>B. staphylinidicola</i> and <i>C. jakajanicola</i> under <i>B. bassiana</i> and <i>C. lepidopterorum</i>, respectively. Moreover, three species, <i>C. roseostromata, C. kyushuensis</i>, and <i>C. shuifuensis</i>, that clustered within the species clade of <i>C. militaris</i> are proposed to be synonymized under the latter taxon. To maintain the monophyly of <i>Cordyceps</i>, we propose to classify <i>Parahevansia koratensis</i> in <i>Cordyceps</i>, which makes the genus <i>Parahevansia</i> obsolete. <b>Taxonomic novelties: New species:</b> <i>Akanthomyces taiwanicus</i> W.Y. Chuang, B. Shrestha & H.A. Ariyaw., <i>Blackwellomyces taiwanensis</i> W.Y. Chuang & H.A. Ariyaw., <i>Cordyceps hehuanensis</i> W.Y. Chuang & H.A. Ariyaw., <i>C. locastrae</i> W.Y. Chuang & H.A. Ariyaw., <i>C. malleiformis</i> W.Y. Chuang & H.A. Ariyaw., <i>C. pseudorosea</i> W.Y. Chuang & H.A. Ariyaw., <i>C. siangyangensis</i> W.Y. Chuang & H.A. Ariyaw., <i>Samsoniella lasiocampidarum</i> W.Y. Chuang & H.A. Ariyaw., <i>S. yuanzuiensis</i> W.Y. Chuang & H.A. Ariyaw., <i>Simplicil
虫草科的物种包括多种昆虫病原真菌。由于2011年提出了多形性真菌的单一命名系统,最近在虫草科真菌的命名法上发生了许多变化。冬虫夏草科植物被广泛用作草药,特别是在亚洲文化中。台湾冬虫夏草科植物的多样性,文献记载较少。在此,我们对整个台湾岛的这个科进行了全面的调查,并提供了一个多样性和分布模式的一瞥。此外,本研究重新评估了虫草科的属和种边界,最后提供了虫草及其近缘属的最新系统发育概述。利用ITS、nrLSU、tef1-α、rpb1和rpb2序列数据,结合形态特征进行系统发育重建,获得10个新种:台湾赤霉、台湾黑wellomyces、河环虫草、locastrae、malleiformis、pseudorosea、香阳虫草、lasiocamidarum、S. yuanzuiensis、Simplicillium salviniae;台湾新记录9种:肯雅维蠓、muscarius蠓、红衣蠓、hepiali蠓、lii蠓、medogensis蠓、鳞翅目蠓、neopruinosa蠓、Si。摘要。此外,我们首次提供了C. ninchukispora前型菌株的DNA序列数据,并确定了该分类单元的种限。此外,本研究还建议将金黄色葡萄球菌和jakajanicola分别归类于球孢白僵菌和鳞翅目白僵菌。此外,本研究还认为,属于军蛾种分支的3个种,即蔷薇C. roseostromata、九州C. kyushuensis和水富C. shuufuensis,在后者的分类群中具有同义性。为了保持冬虫夏草的单系性,我们建议将冬虫夏草属(Parahevansia koratensis)分类在冬虫夏草中,从而使Parahevansia属被淘汰。分类新异:新种:台湾Akanthomyces Chuang, B. Shrestha和H.A. Ariyaw。,台湾黑wellomyomyes chuwyy .;,合欢冬虫夏草:庄炜英,杨惠华。,张伟勇,李耀华。,张伟勇,李海涛。,张伟勇,李海涛。,庄炜英,李耀华。,张伟勇,李晓华,等。,庄炜英,李海华。庄炜英,王丽华,王丽华,等。新组合:Cordyceps koratensis (hywell - jones) H.A. Ariyaw。, M. Stadler & Luangsa-ard。新同义词:白僵菌(Bals.-Criv.)Vuill。、鳞翅目冬虫夏草。C. militaris (L.)引用本文:庄文伟,林玉成,Shrestha B, luangsa - and JJ, Stadler M, Tzean SS,吴胜,Ko CC, Hsieh SY, Wu ML, Wang SC, Shen TL, Ariyawansa HA(2024)。台湾冬虫夏草属物种的系统发育多样性及形态特征。真菌学研究[j];doi: 10.3114 / sim.2024.109.01。
{"title":"Phylogenetic diversity and morphological characterization of cordycipitaceous species in Taiwan.","authors":"W Y Chuang, Y C Lin, B Shrestha, J J Luangsa-Ard, M Stadler, S S Tzean, S Wu, C C Ko, S Y Hsieh, M L Wu, S C Wang, T L Shen, H A Ariyawansa","doi":"10.3114/sim.2024.109.01","DOIUrl":"10.3114/sim.2024.109.01","url":null,"abstract":"&lt;p&gt;&lt;p&gt;Species classified in &lt;i&gt;Cordycipitaceae&lt;/i&gt; (&lt;i&gt;Hypocreales&lt;/i&gt;) include multiple entomopathogenic fungi. Numerous changes have recently occurred in the nomenclature of cordycipitaceous fungi due to the single naming system proposed for pleomorphic fungi in 2011. Species of &lt;i&gt;Cordycipitaceae&lt;/i&gt; are widely applied as herbal medicines, especially in Asian cultures. However, the diversity of &lt;i&gt;Cordycipitaceae&lt;/i&gt; in Taiwan is based on relatively few literature records. Here we conducted a comprehensive survey of this family throughout the island of Taiwan and provided a glimpse of the diversity and distribution patterns. In addition, the present study reassesses the generic and species boundaries of &lt;i&gt;Cordycipitaceae&lt;/i&gt; and finally provides an updated phylogenetic overview of &lt;i&gt;Cordyceps&lt;/i&gt; and allied genera. Phylogenetic reconstructions using combined ITS, nrLSU, &lt;i&gt;tef1-α&lt;/i&gt;, &lt;i&gt;rpb1&lt;/i&gt;, and &lt;i&gt;rpb2&lt;/i&gt; sequence data, along with morphological features, resulted in 10 novel species: &lt;i&gt;Akanthomyces taiwanicus sp. nov.&lt;/i&gt;, &lt;i&gt;Blackwellomyces taiwanensis sp. nov.&lt;/i&gt;, &lt;i&gt;Cordyceps hehuanensis sp. nov.&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;locastrae sp. nov.&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;malleiformis sp. nov.&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;pseudorosea sp. nov.&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;siangyangensis sp. nov.&lt;/i&gt;, &lt;i&gt;Samsoniella lasiocampidarum sp. nov.&lt;/i&gt;, &lt;i&gt;S&lt;/i&gt;. &lt;i&gt;yuanzuiensis sp. nov.&lt;/i&gt;, and &lt;i&gt;Simplicillium salviniae sp. nov.&lt;/i&gt;; and nine new records for Taiwan: &lt;i&gt;A&lt;/i&gt;. &lt;i&gt;kanyawimiae&lt;/i&gt;, &lt;i&gt;A&lt;/i&gt;. &lt;i&gt;muscarius&lt;/i&gt;, &lt;i&gt;S&lt;/i&gt;. &lt;i&gt;cardinalis&lt;/i&gt;, &lt;i&gt;S&lt;/i&gt;. &lt;i&gt;hepiali&lt;/i&gt;, &lt;i&gt;B&lt;/i&gt;. &lt;i&gt;lii&lt;/i&gt;, &lt;i&gt;B&lt;/i&gt;. &lt;i&gt;medogensis&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;lepidopterorum&lt;/i&gt;, &lt;i&gt;C&lt;/i&gt;. &lt;i&gt;neopruinosa&lt;/i&gt;, and &lt;i&gt;Si&lt;/i&gt;. &lt;i&gt;chinense&lt;/i&gt;. Furthermore, we provided DNA sequence data of the ex-type strains of &lt;i&gt;C. ninchukispora&lt;/i&gt; for the first time and determined the species limits of the taxon. In addition, the present study proposed to synonymize &lt;i&gt;B. staphylinidicola&lt;/i&gt; and &lt;i&gt;C. jakajanicola&lt;/i&gt; under &lt;i&gt;B. bassiana&lt;/i&gt; and &lt;i&gt;C. lepidopterorum&lt;/i&gt;, respectively. Moreover, three species, &lt;i&gt;C. roseostromata, C. kyushuensis&lt;/i&gt;, and &lt;i&gt;C. shuifuensis&lt;/i&gt;, that clustered within the species clade of &lt;i&gt;C. militaris&lt;/i&gt; are proposed to be synonymized under the latter taxon. To maintain the monophyly of &lt;i&gt;Cordyceps&lt;/i&gt;, we propose to classify &lt;i&gt;Parahevansia koratensis&lt;/i&gt; in &lt;i&gt;Cordyceps&lt;/i&gt;, which makes the genus &lt;i&gt;Parahevansia&lt;/i&gt; obsolete. &lt;b&gt;Taxonomic novelties: New species:&lt;/b&gt; &lt;i&gt;Akanthomyces taiwanicus&lt;/i&gt; W.Y. Chuang, B. Shrestha & H.A. Ariyaw., &lt;i&gt;Blackwellomyces taiwanensis&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;Cordyceps hehuanensis&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;C. locastrae&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;C. malleiformis&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;C. pseudorosea&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;C. siangyangensis&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;Samsoniella lasiocampidarum&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;S. yuanzuiensis&lt;/i&gt; W.Y. Chuang & H.A. Ariyaw., &lt;i&gt;Simplicil","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"1-56"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663429/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cytospora: an important genus of canker pathogens. 胞孢子菌:口腔病原体的一个重要属。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-09-18 DOI: 10.3114/sim.2024.109.05
L Lin, X L Fan, J Z Groenewald, F Jami, M J Wingfield, H Voglmayr, W Jaklitsch, L A Castlebury, C M Tian, P W Crous
<p><p><i>Cytospora</i> species have commonly been reported as important plant pathogenic fungi with wide host ranges and geographic distributions. With the increase in the number of cryptic species being described, a comprehensive global taxonomic revision of the genus <i>Cytospora</i> is required. The present study includes 399 isolates from 32 countries. These isolates were subjected to DNA sequence analysis for five genomic loci (ITS, <i>act1</i>, <i>rpb2</i>, <i>tef1-α</i> and <i>tub2</i>). Based on these data, it could be confirmed that <i>Cytospora</i>, <i>Leucostoma</i>, <i>Valsa</i>, <i>Valsella</i> and <i>Valseutypella</i> are congeneric. Furthermore, 111 species of <i>Cytospora</i> could also be reassessed, 44 species and four combinations newly introduced, and new typifications proposed for a further three species. Three asexual morphological groups (including 13 asexual morphological types) and three sexual morphological groups (including eight sexual morphological types) were designated. The present study explored the species diversity of <i>Cytospora</i> and re-evaluated the identity of all cultures in the Westerdijk Fungal Biodiversity Institute (Utrecht, The Netherlands) that were deposited as either <i>Cytospora</i> or as one of its related genera. This is the most comprehensive phylogenetic analysis thus far conducted on <i>Cytospora</i> and the results contribute to an increased understanding of the taxonomy of these important fungi. It is also hoped that the findings will lead to improved management strategies for diseases associated <i>Cytospora</i> species. <b>Taxonomic novelties: New species:</b> <i>Cytospora acericola</i> X.L. Fan & C.M. Tian, <i>C. adamsii</i> Jami, Crous & M.J. Wingf., <i>C. beijingensis</i> L. Lin & X.L. Fan, <i>C. betulae</i> Jami, Crous & M.J. Wingf., <i>C. brabeji</i> Jami, Crous & M.J. Wingf., <i>C. castaneicola</i> L. Lin & X.L. Fan, <i>C. cerebriformis</i> L. Lin & X.L. Fan, <i>C. conceptaculata</i> L. Lin & X.L. Fan, <i>C. crataegina</i> X.L. Fan & C.M. Tian, <i>C. deqinensis</i> L. Lin & X.L. Fan, <i>C. diqingensis</i> L. Lin & X.L. Fan, <i>C. eastringensis</i> L. Lin & X.L. Fan, <i>C. elaeagnina</i> L. Lin & X.L. Fan, <i>C. fraxinea</i> X.L. Fan & C.M. Tian, <i>C. guyuanensis</i> L. Lin & X.L. Fan, <i>C. jiufengensis</i> L. Lin & X.L. Fan, <i>C. lauricola</i> L. Lin & X.L. Fan, <i>C. lhasaensis</i> L. Lin & X.L. Fan, <i>C. lijiangensis</i> L. Lin & X.L. Fan, <i>C. lvxinensis</i> L. Lin & X.L. Fan, <i>C. malvicolor</i> X.L. Fan & C.M. Tian, <i>C. multiseriata</i> L. Lin & X.L. Fan, <i>C. nanyangensis</i> X.L. Fan & C.M. Tian, <i>C. polyspora</i> X.L. Fan & C.M. Tian, <i>C. pseudochrysosperma</i> L. Lin & X.L. Fan, <i>C. qinghaiensis</i> L. Lin & X.L. Fan, <i>C. qingshuiensis</i> L. Lin & X.L. Fan, <i>C. sanbaensis</i> L. Lin & X.L. Fan, <i>C. shaanxiensis</i> L. Lin & X.L. Fan, <i>C. shangrilaensis</i> L. Lin & X.L. Fan, <i>C. sidaohensis</i> L. Lin & X.L. Fan, <i>C. sinensis</i> L. Lin & X.L. F
胞孢子菌是一类重要的植物病原真菌,具有广泛的寄主范围和地理分布。随着被描述的隐种数量的增加,需要对胞孢子属进行全面的全球分类修订。目前的研究包括来自32个国家的399株分离株。对5个基因座(ITS、act1、rpb2、tef1-α和tub2)进行DNA序列分析。基于这些数据,可以证实Cytospora、Leucostoma、Valsa、Valsella和Valseutypella是同源的。重新鉴定了111种,新引进44种和4个组合,提出了3种新的分型。划分了3个无性形态组(包括13个无性形态类型)和3个有性形态组(包括8个有性形态类型)。本研究探讨了Cytospora的物种多样性,并重新评估了Westerdijk真菌生物多样性研究所(Utrecht, The Netherlands)保存的作为Cytospora或其相关属之一的所有培养物的身份。这是迄今为止对胞孢子菌进行的最全面的系统发育分析,结果有助于增加对这些重要真菌分类的理解。人们还希望这些发现将有助于改进与胞孢子菌有关的疾病的管理策略。分类新见:新种:acericola Cytospora Fan X.L. & Tian C.M., C. adamsii Jami, Crous & M.J. Wingf。,林丽玲,范晓玲,叶桦,贾密,克劳斯,温明杰。, C. brabeji Jami,克劳斯和M.J. Wingf。林,castaneicola l . & X.L.粉丝,c . cerebriformis l .林& X.L.粉丝,c . conceptaculata l .林& X.L.粉丝,c . crataegina X.L.风扇&田,c . deqinensis l .林& X.L.粉丝,c . diqingensis l .林& X.L.粉丝,c . eastringensis l .林& X.L.粉丝,c . elaeagnina l .林& X.L.粉丝,c . fraxinea X.L.风扇&田,c . guyuanensis l .林& X.L.粉丝,c . jiufengensis l .林& X.L.粉丝,c . lauricola l .林& X.L.粉丝,c . lhasaensis l .林& X.L.粉丝,c . lijiangensis l .林& X.L.粉丝,c . lvxinensis l .林& X.L.粉丝,c . malvicolor X.L.风扇&田,c . multiseriata l .林& X.L.粉丝,c . nanyangensis X.L.风扇&田,c . polyspora X.L.风扇&田,c . pseudochrysosperma l .林& X.L.粉丝,c .血l .林& X.L.粉丝,c . qingshuiensis l .林& X.L.粉丝,c . sanbaensis l .林& X.L.粉丝,c . shaanxiensis l .林& X.L.粉丝,c . shangrilaensis l .林& X.L.粉丝,c . sidaohensis l .林& X.L.粉丝,c . sinensis l .林& X.L.粉丝,c . songshanensis l .林& X.L.粉丝,C. suecica Jami, croous & M.J. Wingf。,紫丁香林丽玲和范小丽,黄麻林丽玲和范小丽,四孢子林丽玲和范小丽,通州种范小丽和田春明,单叶种林丽玲和范小丽,华盛顿种Jami, Crous和M.J. Wingf。, C.小龙门林立林&范小丽,C.银川林立林&范小丽,C.玉林林立林&范小丽,C.玉林林立林&范小丽。新组合:Cytospora auerswaldii (Nitschke) L. Lin & X.L. Fan, C. multicollis (Checa et al.) L. Lin, X.L. Fan & Crous, C. tristicha (De Not.)林丽丽,范晓丽和克劳斯,C. weiriana(彼得)x·l·范克罗斯。新的替代名称:Cytospora desmazieri L. Lin, X.L. Fan & croous, C. fuckeliana L. Lin, X.L. Fan & croous, C. hoffmannii L. Lin, X.L. Fan & croous, C. massarii L. Lin, X.L. Fan & croous, C. nitschkeana L. Lin, X.L. Fan & croous, C. saccardoi L. Lin, X.L. Fan & croous。新近义词:壶形胞孢子。, Bulgakov, T.C. Wen & K.D. Hyde, C. brevispora, G.C. Adams & Jol。鲁克斯)G.C.亚当斯和罗斯曼,c.c cenisia Sacc。,田志明,范小林,陈志明。, Bulgakov & K.D. Hyde, C. ershadii Zafari & Hanifeh, C. erumpens Norph。, Bulgakov, T.C. Wen和K.D. Hyde, C. fraxinigena Senan。尚庆杰,E. Camporesi & K.D. Hyde, C. granati D.P. Lawr。, L.A. Holland & Trouillas, C. hippophaicola Spetik, Eichmeier, Gramaje, Stuskova & Berraf-Tebbal, C. massariana Sacc。, C.妮维雅(Hoffm.)Sacc。C. parakantschavelii Norph。, Bulgakov, T.C. Wen和K.D. Hyde, C. parasitica Norph。, Bulgakov & K.D. Hyde, C. paratranslucens Norph。, Bulgakov, T.C. Wen; K.D. Hyde, c.p inidesm。, C. populicola D.P. Lawr。, la . Holland & Trouillas, C. predpioensis尚q.j, Norph。, Camporesi & K.D. Hyde, C. quercicola Senan。, Camporesi & K.D. Hyde, C. rosae Senan。, Camporesi & K.D. Hyde,
{"title":"<i>Cytospora</i>: an important genus of canker pathogens.","authors":"L Lin, X L Fan, J Z Groenewald, F Jami, M J Wingfield, H Voglmayr, W Jaklitsch, L A Castlebury, C M Tian, P W Crous","doi":"10.3114/sim.2024.109.05","DOIUrl":"10.3114/sim.2024.109.05","url":null,"abstract":"&lt;p&gt;&lt;p&gt;&lt;i&gt;Cytospora&lt;/i&gt; species have commonly been reported as important plant pathogenic fungi with wide host ranges and geographic distributions. With the increase in the number of cryptic species being described, a comprehensive global taxonomic revision of the genus &lt;i&gt;Cytospora&lt;/i&gt; is required. The present study includes 399 isolates from 32 countries. These isolates were subjected to DNA sequence analysis for five genomic loci (ITS, &lt;i&gt;act1&lt;/i&gt;, &lt;i&gt;rpb2&lt;/i&gt;, &lt;i&gt;tef1-α&lt;/i&gt; and &lt;i&gt;tub2&lt;/i&gt;). Based on these data, it could be confirmed that &lt;i&gt;Cytospora&lt;/i&gt;, &lt;i&gt;Leucostoma&lt;/i&gt;, &lt;i&gt;Valsa&lt;/i&gt;, &lt;i&gt;Valsella&lt;/i&gt; and &lt;i&gt;Valseutypella&lt;/i&gt; are congeneric. Furthermore, 111 species of &lt;i&gt;Cytospora&lt;/i&gt; could also be reassessed, 44 species and four combinations newly introduced, and new typifications proposed for a further three species. Three asexual morphological groups (including 13 asexual morphological types) and three sexual morphological groups (including eight sexual morphological types) were designated. The present study explored the species diversity of &lt;i&gt;Cytospora&lt;/i&gt; and re-evaluated the identity of all cultures in the Westerdijk Fungal Biodiversity Institute (Utrecht, The Netherlands) that were deposited as either &lt;i&gt;Cytospora&lt;/i&gt; or as one of its related genera. This is the most comprehensive phylogenetic analysis thus far conducted on &lt;i&gt;Cytospora&lt;/i&gt; and the results contribute to an increased understanding of the taxonomy of these important fungi. It is also hoped that the findings will lead to improved management strategies for diseases associated &lt;i&gt;Cytospora&lt;/i&gt; species. &lt;b&gt;Taxonomic novelties: New species:&lt;/b&gt; &lt;i&gt;Cytospora acericola&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. adamsii&lt;/i&gt; Jami, Crous & M.J. Wingf., &lt;i&gt;C. beijingensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. betulae&lt;/i&gt; Jami, Crous & M.J. Wingf., &lt;i&gt;C. brabeji&lt;/i&gt; Jami, Crous & M.J. Wingf., &lt;i&gt;C. castaneicola&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. cerebriformis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. conceptaculata&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. crataegina&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. deqinensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. diqingensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. eastringensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. elaeagnina&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. fraxinea&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. guyuanensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. jiufengensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. lauricola&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. lhasaensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. lijiangensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. lvxinensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. malvicolor&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. multiseriata&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. nanyangensis&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. polyspora&lt;/i&gt; X.L. Fan & C.M. Tian, &lt;i&gt;C. pseudochrysosperma&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. qinghaiensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. qingshuiensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. sanbaensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. shaanxiensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. shangrilaensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. sidaohensis&lt;/i&gt; L. Lin & X.L. Fan, &lt;i&gt;C. sinensis&lt;/i&gt; L. Lin & X.L. F","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"323-401"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663427/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142882995","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogeny, evolution and a re-classification of the Lichinomycetes. 地衣菌的系统发育、进化和再分类。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-21 DOI: 10.3114/sim.2024.109.09
M Prieto, M Wedin, M Schultz
<p><p>The <i>Lichinomycetes</i> is an independent lichenized lineage within the <i>Ascomycota</i> comprising <i>ca</i>. 390 species and 50 genera. Very few studies have dealt with family and genus classification using molecular data and many groups are in need of thorough revision. Thus, we constructed a multilocus phylogeny (mtSSU, <i>RPB2</i> and <i>mcm7</i> gene regions) including 190 specimens of <i>Lichinomycetes</i> belonging to 126 species. Ancestral state reconstruction analyses were carried out to trace the evolution of selected characters. The current classification scheme of the <i>Lichinomycetes</i> based on morphological and anatomical characters is in great conflict with the phylogenetic relationships resulting from the present study. The results suggest substantial non-monophyly at the family and genus levels. A revised classification is proposed here and an overview of genera accepted in the <i>Lichinomycetes</i> is given. Ancestral <i>Lichinomycetes</i> are reconstructed as crustose with pycnoascocarps and octosporous asci. We used a combination of characters to delineate groups including the ascoma development and the type of asci. The revised classification includes 11 new genera, five resurrected genera, and 54 new combinations distributed in four families (three emended and one new). Three new species are also described. <b>Taxonomic novelties: New family:</b> <i>Lichinellaceae</i> M. Schultz & M. Prieto. <b>New genera:</b> <i>Allopyrenis</i> M. Schultz & M. Prieto, <i>Gonotichia</i> M. Schultz & M. Prieto, <i>Lapismalleus</i> M. Schultz & M. Prieto, <i>Lingolemma</i> M. Schultz & M. Prieto, <i>Paludolemma</i> M. Schultz & M. Prieto, <i>Paracyphus</i> M. Schultz & M. Prieto, <i>Peltolemma</i> M. Schultz & M. Prieto, <i>Pseudocarpon</i> M. Schultz & M. Prieto, <i>Pseudotichia</i> M. Schultz & M. Prieto, <i>Pycnolemma</i> M. Schultz & M. Prieto, <i>Tichocyphus</i> M. Schultz & M. Prieto. <b>New species:</b> <i>Paracyphus gotlandicus</i> M. Schultz & M. Prieto, <i>Pseudocarpon persimile</i> M. Schultz & M. Prieto, <i>Tichocyphus gotlandicus</i> M. Schultz & M. Prieto. <b>New combinations:</b> <i>Allopyrenis grumulifera</i> (Nyl.) M. Schultz & M. Prieto, <i>Allopyrenis haemaleella</i> (Nyl.) M. Schultz & M. Prieto, <i>Allopyrenis impolita</i> (Th. Fr.) M. Schultz & M. Prieto, <i>Allopyrenis phaeococca</i> (Tuck.) M. Schultz & M. Prieto, <i>Allopyrenis reducta</i> (Th. Fr.) M. Schultz & M. Prieto, <i>Allopyrenis sanguinea</i> (Anzi) M. Schultz & M. Prieto, <i>Allopyrenis tenuis</i> (Henssen) M. Schultz & M. Prieto, <i>Cladopsis densisidiata</i> (Aptroot <i>et al.</i>) M. Schultz & M. Prieto, <i>Cladopsis foederata</i> (Nyl.) M. Schultz & M. Prieto, <i>Cladopsis guyanensis</i> (M. Schultz <i>et al.</i>) M. Schultz & M. Prieto, <i>Cladopsis palmana</i> (J. Steiner) M. Schultz & M. Prieto, <i>Cladopsis polycocca</i> (Nyl.) M. Schultz & M. Prieto, <i>Forssellia canariensis</i> (Henssen) M. Schultz & M. Prieto, <i>Forssellia concordatu
地衣菌是子囊菌门中独立的地衣系,包括约390种50属。很少有研究使用分子数据进行科属分类,许多类群需要彻底修订。因此,我们构建了一个包含126种190份地衣菌标本的多位点系统发育(mtSSU、RPB2和mcm7基因区域)。对所选性状进行祖先状态重建分析,追踪其进化过程。目前基于形态和解剖特征的地衣菌分类方案与本研究得出的系统发育关系存在很大冲突。结果表明,在科和属水平上存在大量的非单系性。本文提出了一种新的分类方法,并对地衣菌属进行了综述。古老的地衣菌被重建为壳壳菌,具有皮囊菌和八孢子囊菌。我们使用一系列的特征来划分类群,包括癌肿的发展和癌肿的类型。修订后的分类包括11个新属,5个复活属和54个新组合,分布在4个科(3个修订和1个新)。还发现了三个新种。分类学上的新发现:新科:地衣科。新属:Allopyrenis M. Schultz & M. Prieto, Gonotichia M. Schultz & M. Prieto, Lapismalleus M. Schultz & M. Prieto, Lingolemma M. Schultz & M. Prieto, Paludolemma M. Schultz & M. Prieto, Paracyphus M. Schultz & M. Prieto, Pseudotichia M. Schultz & M. Prieto, Pycnolemma M. Schultz & M. Prieto, Tichocyphus M. Schultz & M. Prieto。新种:golandicus Paracyphus M. Schultz & M. Prieto, Pseudocarpon perspem . Schultz & M. Prieto, Tichocyphus golandicus M. Schultz & M. Prieto。新组合:异丙芘(Allopyrenis grumulifera)M. Schultz & M. Prieto, haemaleella Allopyrenis (Nyl)M.舒尔茨和M.普列托,《异种pypyrenis impolita》(第6卷)。M. Schultz & M. Prieto,异丙链球菌(塔克)M. Schultz & M. Prieto。M. Schultz & M. Prieto, Allopyrenis sanguinea (Anzi) M. Schultz & M. Prieto, Allopyrenis tenuis (Henssen) M. Schultz & M. Prieto, Cladopsis densidiata (Aptroot等人)M. Schultz & M. Prieto, Cladopsis foederata (Nyl.)M. Schultz & M. Prieto, Cladopsis guyanensis (M. Schultz等人)M. Schultz & M. Prieto, Cladopsis palmana (J. Steiner) M. Schultz & M. Prieto, Cladopsis polycocca (Nyl.)M. Schultz & M. Prieto, Forssellia canariensis (Henssen) M. Schultz & M. Prieto, Forssellia concordatula (Nyl)M.舒尔茨和M.普列托,淋球菌(莱托)M.舒尔茨和M.普列托,Lapismalleus lugubris (A. Massal)M. Schultz & M. Prieto, Lempholemma separgreatum (Nyl.)M. Schultz & M. Prieto,黄芩地衣(Makryi) M. Schultz,地衣霉(Brusse) M. Schultz,卢西塔尼亚地衣霉(Henssen) M. Schultz, pulvinata地衣霉(E. Dahl) M. Schultz,施莱希地衣霉(Hepp) M. Schultz,地衣霉(Makryi) M. Schultz, Lingolemma lingulatum (Tuck)M. Schultz & M. Prieto, Paludolemma syrenarum (C.J. Lewis & M. Schultz) M. Schultz & M. Prieto, Peltolemma socotranum (M. Schultz) M. Schultz & M. Prieto, phyllisum aotearoa (Henssen & B. Bartlett) M. Schultz & M. Prieto, phyllisum圆柱状瘤(Vain)M.舒尔茨,Phylliscum laatokkaense(徒劳的)M.舒尔茨和M.普列托,Phylliscum疏忽(亨森)M.舒尔茨和M.普列托,Phylliscum许可(奈尔)M. Schultz & M. Prieto, Phylliscum rhodostictum (Taylor) M. Schultz & M. Prieto, Porocyphus antarcticus (Cromb)M. Schultz & M. Prieto, Porocyphus macrosporus (Henssen等人)M. Schultz & M. Prieto, Porocyphus minutissimus (Henssen) M. Schultz, Porocyphus rosulans (A. Henssen) M. Schultz, Porocyphus tasmanicus (A. Henssen) M. Schultz, Porocyphus willeyi (Tuck.)M. Schultz & M. Prieto,《伪鱼》(纽约)M. Schultz & M. Prieto, Pycnolemma polycarpum (M. Schultz), Synalissina botryosa (A. Massal)。M.舒尔茨和M.普列托,《进化的同一性》(塔克出版社)M. Schultz & M. Prieto, Synalissina冷凝(阿诺德)M. Schultz & M. Prieto, Synalissina degeliana(下午Jørg)M.舒尔茨和M.普列托,Synalissina disansa (H. Magn.)M. Schultz & M. Prieto, Synalissina错综复杂(J. Steiner) M. S
{"title":"Phylogeny, evolution and a re-classification of the <i>Lichinomycetes</i>.","authors":"M Prieto, M Wedin, M Schultz","doi":"10.3114/sim.2024.109.09","DOIUrl":"10.3114/sim.2024.109.09","url":null,"abstract":"&lt;p&gt;&lt;p&gt;The &lt;i&gt;Lichinomycetes&lt;/i&gt; is an independent lichenized lineage within the &lt;i&gt;Ascomycota&lt;/i&gt; comprising &lt;i&gt;ca&lt;/i&gt;. 390 species and 50 genera. Very few studies have dealt with family and genus classification using molecular data and many groups are in need of thorough revision. Thus, we constructed a multilocus phylogeny (mtSSU, &lt;i&gt;RPB2&lt;/i&gt; and &lt;i&gt;mcm7&lt;/i&gt; gene regions) including 190 specimens of &lt;i&gt;Lichinomycetes&lt;/i&gt; belonging to 126 species. Ancestral state reconstruction analyses were carried out to trace the evolution of selected characters. The current classification scheme of the &lt;i&gt;Lichinomycetes&lt;/i&gt; based on morphological and anatomical characters is in great conflict with the phylogenetic relationships resulting from the present study. The results suggest substantial non-monophyly at the family and genus levels. A revised classification is proposed here and an overview of genera accepted in the &lt;i&gt;Lichinomycetes&lt;/i&gt; is given. Ancestral &lt;i&gt;Lichinomycetes&lt;/i&gt; are reconstructed as crustose with pycnoascocarps and octosporous asci. We used a combination of characters to delineate groups including the ascoma development and the type of asci. The revised classification includes 11 new genera, five resurrected genera, and 54 new combinations distributed in four families (three emended and one new). Three new species are also described. &lt;b&gt;Taxonomic novelties: New family:&lt;/b&gt; &lt;i&gt;Lichinellaceae&lt;/i&gt; M. Schultz & M. Prieto. &lt;b&gt;New genera:&lt;/b&gt; &lt;i&gt;Allopyrenis&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Gonotichia&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Lapismalleus&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Lingolemma&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Paludolemma&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Paracyphus&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Peltolemma&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Pseudocarpon&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Pseudotichia&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Pycnolemma&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Tichocyphus&lt;/i&gt; M. Schultz & M. Prieto. &lt;b&gt;New species:&lt;/b&gt; &lt;i&gt;Paracyphus gotlandicus&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Pseudocarpon persimile&lt;/i&gt; M. Schultz & M. Prieto, &lt;i&gt;Tichocyphus gotlandicus&lt;/i&gt; M. Schultz & M. Prieto. &lt;b&gt;New combinations:&lt;/b&gt; &lt;i&gt;Allopyrenis grumulifera&lt;/i&gt; (Nyl.) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis haemaleella&lt;/i&gt; (Nyl.) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis impolita&lt;/i&gt; (Th. Fr.) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis phaeococca&lt;/i&gt; (Tuck.) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis reducta&lt;/i&gt; (Th. Fr.) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis sanguinea&lt;/i&gt; (Anzi) M. Schultz & M. Prieto, &lt;i&gt;Allopyrenis tenuis&lt;/i&gt; (Henssen) M. Schultz & M. Prieto, &lt;i&gt;Cladopsis densisidiata&lt;/i&gt; (Aptroot &lt;i&gt;et al.&lt;/i&gt;) M. Schultz & M. Prieto, &lt;i&gt;Cladopsis foederata&lt;/i&gt; (Nyl.) M. Schultz & M. Prieto, &lt;i&gt;Cladopsis guyanensis&lt;/i&gt; (M. Schultz &lt;i&gt;et al.&lt;/i&gt;) M. Schultz & M. Prieto, &lt;i&gt;Cladopsis palmana&lt;/i&gt; (J. Steiner) M. Schultz & M. Prieto, &lt;i&gt;Cladopsis polycocca&lt;/i&gt; (Nyl.) M. Schultz & M. Prieto, &lt;i&gt;Forssellia canariensis&lt;/i&gt; (Henssen) M. Schultz & M. Prieto, &lt;i&gt;Forssellia concordatu","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"595-655"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663425/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Known from trees and the tropics: new insights into the Fusarium lateritium species complex. 从树木和热带地区得知:红土镰刀菌物种复合体的新见解。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-09-26 DOI: 10.3114/sim.2024.109.06
M M Costa, M Sandoval-Denis, G M Moreira, H Kandemir, A Kermode, A G Buddie, M J Ryan, Y Becker, A Yurkov, W Maier, J Z Groenewald, L H Pfenning, P W Crous
<p><p>The <i>Fusarium lateritium</i> species complex (FLSC) currently comprises 11 phylogenetic species, including accepted names such as <i>F. lateritium</i>, <i>F. sarcochroum</i>, and <i>F. stilboides</i>, which have mostly been reported in association with citrus and coffee. Many varieties were documented by Wollenweber & Reinking (1935), which is indicative of a wider diversity of species within this group. The lack of type material in some cases, especially for the older names, means that definition by molecular phylogeny is very difficult. In the present study, we examined 179 strains related to <i>F. lateritium</i> from different countries and substrates. Historic reference material, including representative strains from the Wollenweber & Reinking (1935) varieties were included in this study, DNA sequences were generated for comparison, and the morphology correlated with original descriptions to enable the correct application of older names. Strains were characterized by multi-gene phylogenetic analyses based on fragments of the β-tubulin (<i>tub2</i>), calmodulin (<i>CaM</i>), RNA polymerase II second largest subunit (<i>rpb2</i>), and translation elongation factor 1-alpha (<i>tef1</i>) genes, evaluation of morphological characters and host-substrate preferences. The biological species concept was tested by crossings <i>in vitro</i>. Strains previously identified as <i>F. lateritium</i>, <i>F. stilboides</i>, or one of their varieties based on morphology, were found to belong to 16 species in the FLSC, but also to species from six other species complexes (SC), including the <i>F. citricola</i> SC, <i>F. heterosporum</i> SC, <i>F. incarnatum-equiseti</i> SC, <i>F. redolens</i> SC, <i>F. sambucinum</i> SC, and the <i>F. tricinctum</i> SC. Eleven new phylogenetic and two biological species are described in the FLSC, and emended descriptions are provided for four previously described species. An epitype is designated for <i>F. lateritium</i>, and <i>F. lateritium</i> var. <i>longum</i>, a former variety within the FLSC, is lecto- and epitypified, and elevated to species level with a replacement name. <b>Taxonomic novelties: New species:</b> <i>F. aurantii</i> M.M. Costa, Sand.-Den. & Crous, <i>F. chlamydocopiosum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. citri-sinensis</i> L. Zhao & J.X. Deng, <i>F. coffeibaccae</i> M.M. Costa, L.H. Pfenning, Sand.-Den. & Crous, <i>F. crocatum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. malawiense</i> M.M. Costa, Sand.-Den. & Crous, <i>F. microcyclum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. oliniae</i> M.M. Costa, Sand.-Den. & Crous; <i>F. rufum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. stramineum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. velutinum</i> M.M. Costa, Sand.-Den. & Crous, <i>F. verruculosum</i> M.M. Costa, Sand.-Den. & Crous; <b>Replacement name:</b> <i>F. hanswilhelmii</i> M.M. Costa, Sand.-Den. & Crous; <b>Epitype (basionym):</b> <i>F. lateritium</i> Nees, <i>F. lateritium</i> var. <i>longum</i>
红木镰刀菌物种复合体(FLSC)目前包括11种系统发育物种,包括红木镰刀菌、肉镰刀菌和stilboides等公认的名称,它们大多与柑橘和咖啡有关。Wollenweber和Reinking(1935)记录了许多品种,这表明在这个群体中物种的多样性更大。在某些情况下缺乏类型材料,特别是对于较旧的名称,意味着通过分子系统发育来定义是非常困难的。在本研究中,我们检测了来自不同国家和不同基质的179株与红土赤霉病有关的菌株。本研究纳入了历史参考资料,包括Wollenweber & Reinking(1935)品种的代表性菌株,生成DNA序列进行比较,并将形态学与原始描述相关联,以便正确使用较早的名称。利用β-微管蛋白(tub2)、钙调蛋白(CaM)、RNA聚合酶II第二大亚基(rpb2)和翻译延伸因子1- α (tef1)基因片段进行多基因系统发育分析,分析菌株的形态特征和宿主-底物偏好。通过体外杂交验证了生物物种概念。经形态学鉴定为红土赤霉病菌、stilboides赤霉病菌或其变种之一的菌株,在FLSC中被发现属于16个种,但也属于其他6个种复合物(SC)的种,包括F. citricola SC、F. heterosporum SC、F. incarnatum-equiseti SC、F. redolens SC、F. sambucinum SC和F. tricinctum SC。在FLSC中描述了11个新的系统发育种和2个生物种。并对先前描述的四种提供了修订的描述。红土F. lateritium var. longum被指定为一个表型,红土F. lateritium var. longum是FLSC内的一个前品种,被lecto和表型化,并以一个替代名称提升到物种水平。分类新异:新种:F. aurantii M.M. Costa, sand - den。& croous, F. chlamydocopiosum, M.M. Costa, sand - den。赵丽丽,邓俊贤,科斯塔,彭宁,沙登。M.M.科斯塔,桑德-登。M.M.科斯塔,桑德-登。M.M. Costa, sand - den。&克劳斯,F. oliniae, M.M. Costa, sand - den。& Crous;F. rufum . M.M.科斯塔,沙登。& cros, F. stramineum, M.M. Costa, sand - den。M.M.科斯塔,桑德-登。M.M. Costa, sand - den。& Crous;替代名称:F. hanswilhelmii M.M. Costa, sand - den。& Crous;典型型(基底型):红土F. lateritium Nees,红土F. lateritium var. longum Wollenw;卵细胞型(基底):红土F. lateritium var. longum Wollenw。引用本文:Costa MM, Sandoval-Denis M, Moreira GM, Kandemir H, Kermode A, Buddie AG, Ryan MJ, Becker Y, Yurkov A, Maier W, Groenewald JZ, Pfenning LH, Crous PW(2024)。从树木和热带地区得知:红土镰刀菌物种复合体的新见解。真菌学研究109:403-450。doi: 10.3114 / sim.2024.109.06。
{"title":"Known from trees and the tropics: new insights into the <i>Fusarium lateritium</i> species complex.","authors":"M M Costa, M Sandoval-Denis, G M Moreira, H Kandemir, A Kermode, A G Buddie, M J Ryan, Y Becker, A Yurkov, W Maier, J Z Groenewald, L H Pfenning, P W Crous","doi":"10.3114/sim.2024.109.06","DOIUrl":"10.3114/sim.2024.109.06","url":null,"abstract":"&lt;p&gt;&lt;p&gt;The &lt;i&gt;Fusarium lateritium&lt;/i&gt; species complex (FLSC) currently comprises 11 phylogenetic species, including accepted names such as &lt;i&gt;F. lateritium&lt;/i&gt;, &lt;i&gt;F. sarcochroum&lt;/i&gt;, and &lt;i&gt;F. stilboides&lt;/i&gt;, which have mostly been reported in association with citrus and coffee. Many varieties were documented by Wollenweber & Reinking (1935), which is indicative of a wider diversity of species within this group. The lack of type material in some cases, especially for the older names, means that definition by molecular phylogeny is very difficult. In the present study, we examined 179 strains related to &lt;i&gt;F. lateritium&lt;/i&gt; from different countries and substrates. Historic reference material, including representative strains from the Wollenweber & Reinking (1935) varieties were included in this study, DNA sequences were generated for comparison, and the morphology correlated with original descriptions to enable the correct application of older names. Strains were characterized by multi-gene phylogenetic analyses based on fragments of the β-tubulin (&lt;i&gt;tub2&lt;/i&gt;), calmodulin (&lt;i&gt;CaM&lt;/i&gt;), RNA polymerase II second largest subunit (&lt;i&gt;rpb2&lt;/i&gt;), and translation elongation factor 1-alpha (&lt;i&gt;tef1&lt;/i&gt;) genes, evaluation of morphological characters and host-substrate preferences. The biological species concept was tested by crossings &lt;i&gt;in vitro&lt;/i&gt;. Strains previously identified as &lt;i&gt;F. lateritium&lt;/i&gt;, &lt;i&gt;F. stilboides&lt;/i&gt;, or one of their varieties based on morphology, were found to belong to 16 species in the FLSC, but also to species from six other species complexes (SC), including the &lt;i&gt;F. citricola&lt;/i&gt; SC, &lt;i&gt;F. heterosporum&lt;/i&gt; SC, &lt;i&gt;F. incarnatum-equiseti&lt;/i&gt; SC, &lt;i&gt;F. redolens&lt;/i&gt; SC, &lt;i&gt;F. sambucinum&lt;/i&gt; SC, and the &lt;i&gt;F. tricinctum&lt;/i&gt; SC. Eleven new phylogenetic and two biological species are described in the FLSC, and emended descriptions are provided for four previously described species. An epitype is designated for &lt;i&gt;F. lateritium&lt;/i&gt;, and &lt;i&gt;F. lateritium&lt;/i&gt; var. &lt;i&gt;longum&lt;/i&gt;, a former variety within the FLSC, is lecto- and epitypified, and elevated to species level with a replacement name. &lt;b&gt;Taxonomic novelties: New species:&lt;/b&gt; &lt;i&gt;F. aurantii&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. chlamydocopiosum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. citri-sinensis&lt;/i&gt; L. Zhao & J.X. Deng, &lt;i&gt;F. coffeibaccae&lt;/i&gt; M.M. Costa, L.H. Pfenning, Sand.-Den. & Crous, &lt;i&gt;F. crocatum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. malawiense&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. microcyclum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. oliniae&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous; &lt;i&gt;F. rufum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. stramineum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. velutinum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous, &lt;i&gt;F. verruculosum&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous; &lt;b&gt;Replacement name:&lt;/b&gt; &lt;i&gt;F. hanswilhelmii&lt;/i&gt; M.M. Costa, Sand.-Den. & Crous; &lt;b&gt;Epitype (basionym):&lt;/b&gt; &lt;i&gt;F. lateritium&lt;/i&gt; Nees, &lt;i&gt;F. lateritium&lt;/i&gt; var. &lt;i&gt;longum&lt;/i&gt;","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"403-450"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663422/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proposal of one new family, seven new genera and seventy new basidiomycetous yeast species mostly isolated from Tibet and Yunnan provinces, China. 提出1个新科,7个新属,70个担子菌酵母新种,主要分离自西藏和云南。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-27 DOI: 10.3114/sim.2024.109.02
Y-L Jiang, W-J Bao, F Liu, G-S Wang, A M Yurkov, Q Ma, Z-D Hu, X-H Chen, W-N Zhao, A-H Li, Q-M Wang
<p><p>More than 2 000 yeast strains isolated from 1 200 samples mostly collected from Tibet and Yunnan provinces in China were identified as 462 species according to the internal transcribed spacer including the 5.8S rDNA (ITS) and the D1/D2 domains of the large subunit rDNA (LSU) sequence analyses. Among them, 70 new basidiomycetous yeast species were proposed based on the multi-locus phylogenetic analyses including the D1/D2 domains, the ITS, the small subunit rDNA (SSU), the largest subunit of RNA polymerase II (<i>RPB1</i>), the second largest subunit of RNA polymerase II (<i>RPB2</i>) and translation elongation factor 1-α (<i>TEF1</i>), as well as the phenotypic comparisons. The average nucleotide identity (ANI) analysis with the genomic metric was also used in the evaluation of the species delimitation for the genera <i>Holtermannia</i>, <i>Mrakia</i> and <i>Takashimella</i> that contain closely related species with low sequence heterogeneity in both ITS and D1/D2 regions. Forty-six new species belonged to 16 genera in the <i>Agaricomycotina</i>, 13 new species occurred in 12 genera in the <i>Pucciniomycotina</i>, three new species were distributed in three genera in the <i>Ustilaginomycotina,</i> and eight new species were classified in seven newly established genera. One new family was also proposed based on one of these new genera. The analyses revealed several inaccurate species names attributed to genomes deposited in GenBank, indicating the necessity of a more rigorous quality checks of the genomes deposited in the public databases. <b>Taxonomic novelties: New family:</b> <i>Vankyiozymaceae</i> Q.-M. Wang; <b>New genera:</b> <i>Baiomyces</i> Q.-M. Wang, <i>Bauerozyma</i> Q.-M. Wang, <i>Fengyania</i> Q.-M. Wang, <i>Foliozyma</i> Q.-M. Wang, <i>Litoriozyma</i> Q.-M. Wang, <i>Nakaseozyma</i> Q.-M. Wang, <i>Vankyiozyma</i> Q.-M. Wang; <b>New species:</b> <i>Baiomyces sejilaensis</i> Q.-M. Wang, <i>Bauerozyma artemisiae</i> Q.-M. Wang, <i>Boekhoutia foliicola</i> Q.-M. Wang, <i>Buckleyzyma pseudoaurantiaca</i> Q.-M. Wang, <i>Carlosrosaea betulae</i> Q.-M. Wang, <i>Carlosrosaea rhododendri</i> Q.-M. Wang, <i>Carlosrosaea yunnanensis</i> Q.-M. Wang, <i>Chrysozyma quercicola</i> Q.-M. Wang, <i>Curvibasidium pini</i> Q.-M. Wang, <i>Cystobasidium cunninghamiae</i> Q.-M. Wang, <i>Derxomyces foliicola</i> Q.-M. Wang, <i>Derxomyces motuoensis</i> Q.-M. Wang, <i>Derxomyces orientalis</i> Q.-M. Wang, <i>Derxomyces paracylindricus</i> Q.-M. Wang, <i>Exobasidium lijiangense</i> Q.-M. Wang, <i>Fengyania pteridophytorum</i> Q.-M. Wang, <i>Foliozyma liliicola</i> Q.-M. Wang, <i>Halobasidium phyllophilum</i> Q.-M. Wang, <i>Hannaella artemisiae</i> Q.-M. Wang, <i>Hannaella pteridophytorum</i> Q.-M. Wang, <i>Hannaella urticae</i> Q.-M. Wang, <i>Holtermannia pseudosaccardoi</i> Q.-M. Wang, <i>Kockovaella cariosiligni</i> Q.-M. Wang, <i>Kockovaella foliicola</i> Q.-M. Wang, <i>Kondoa tibetensis</i> Q.-M. Wang, <i>Kwoniella hippophaes</i> Q.-M. Wang, <i>Kwonie
从中国西藏和云南的1 200份酵母菌样品中分离得到2 000多株酵母菌,通过对其5.8S rDNA (ITS)和大亚基rDNA (LSU) D1/D2结构域的内部转录间隔区分析,鉴定出462种。通过D1/D2结构域、ITS、rDNA小亚基(SSU)、RNA聚合酶II最大亚基(RPB1)、RNA聚合酶II第二大亚基(RPB2)和翻译伸长因子1-α (TEF1)的多位点系统发育分析和表型比较,提出了70个担子菌酵母新种。利用平均核苷酸同一性(ANI)分析对Holtermannia属、Mrakia属和Takashimella属的种界进行了评价,这些属的种系亲缘关系密切,在ITS区和D1/D2区序列异质性均较低。真菌门16属46新种,真菌门12属13新种,粘菌门3属3新种,7新建立属8新种。在这些新属的基础上还提出了一个新的科。这些分析揭示了一些不准确的物种名称归因于存放在GenBank中的基因组,这表明有必要对存放在公共数据库中的基因组进行更严格的质量检查。新科:Vankyiozymaceae Q.-M。王;新属:Baiomyces Q.-M。鲍氏酵母菌;王凤艳,秦明。王启明,傅立明。王启明,李志强。王庆明,王庆明。王启明,万基酵素;王;新种:sejilaensis q.m。王启明,青蒿鲍氏酵母菌;王庆明。伪金巴克酵素;王庆明,花椰菜。王庆明,叶红,杜鹃花。王启明,云南龙葵。王庆明,黄曲霉;王庆明。王庆明。王庆明,叶面生皮霉;王庆明,原生德酵母菌。王庆明,东方derxomyes orientalis;王庆明,副柱面生霉;王启明。王庆明。百合花卵泡酶;王庆明,叶根菌。王启明,青蒿;王庆明,叶蕨属植物。“荨麻”,王启明。霍特曼氏假性痤疮;王庆明,孔氏菌。王庆明。王,Kondoa藏族q.m。王庆明;王庆明,金银科氏菌;海南立菌王启明;王梅拉·玛丽娜·季明。王庆明,叶间小孢子菌;王庆明,叶面小孢子菌;王庆明。王庆明,杜鹃属植物。王庆明,中菌酵素。王庆明,金银花中菌酵母菌;汪庆明,凤蝶属植物。王庆明,金凤蝶;王启明,银耳。王庆明。王庆明,法菲杜鹃;王庆明,黄瓜黑穗病菌。王清明,腐殖质黑霉菌。王庆明,百合暗色酵母菌。林芝Piskurozyma Wang, q - m。王启明,南益Piskurozyma nananyiensis;陆源褐霉菌;王庆明,假酵素桑黄菌。王庆明,金银耳。王庆明,假银耳杜鹃。林芝红曲菌王庆明;王庆明。王启明,高氏皮质。王庆明,白桦;​王庆明,中国遗产学家。王庆明,杨梅;王庆明,张国强,张国强。王秋明,牛蒡;王庆明,杜鹃属植物。王庆明,叶黄菌;王启明,万古酵素。王文丽雅。西尔维柯拉。王庆明,过氧化氢酵素。王庆明,海绵状乳酸菌;王庆明,维氏酵母菌;王庆明,黄庆明。王庆明,黄庆明。王庆明,叶青菌;王庆明,王庆明。王庆明,桂花;王。引用本文:蒋彦龙,鲍文杰,刘峰,王广生,Yurkov AM,马强,胡志东,陈晓华,赵文宁,李爱华,王启明(2024)。提出1个新科,7个新属,70个担子菌酵母新种,主要分离自西藏和云南。真菌学研究109:57-153。doi: 10.3114 / sim.2024.109.02。
{"title":"Proposal of one new family, seven new genera and seventy new basidiomycetous yeast species mostly isolated from Tibet and Yunnan provinces, China.","authors":"Y-L Jiang, W-J Bao, F Liu, G-S Wang, A M Yurkov, Q Ma, Z-D Hu, X-H Chen, W-N Zhao, A-H Li, Q-M Wang","doi":"10.3114/sim.2024.109.02","DOIUrl":"10.3114/sim.2024.109.02","url":null,"abstract":"&lt;p&gt;&lt;p&gt;More than 2 000 yeast strains isolated from 1 200 samples mostly collected from Tibet and Yunnan provinces in China were identified as 462 species according to the internal transcribed spacer including the 5.8S rDNA (ITS) and the D1/D2 domains of the large subunit rDNA (LSU) sequence analyses. Among them, 70 new basidiomycetous yeast species were proposed based on the multi-locus phylogenetic analyses including the D1/D2 domains, the ITS, the small subunit rDNA (SSU), the largest subunit of RNA polymerase II (&lt;i&gt;RPB1&lt;/i&gt;), the second largest subunit of RNA polymerase II (&lt;i&gt;RPB2&lt;/i&gt;) and translation elongation factor 1-α (&lt;i&gt;TEF1&lt;/i&gt;), as well as the phenotypic comparisons. The average nucleotide identity (ANI) analysis with the genomic metric was also used in the evaluation of the species delimitation for the genera &lt;i&gt;Holtermannia&lt;/i&gt;, &lt;i&gt;Mrakia&lt;/i&gt; and &lt;i&gt;Takashimella&lt;/i&gt; that contain closely related species with low sequence heterogeneity in both ITS and D1/D2 regions. Forty-six new species belonged to 16 genera in the &lt;i&gt;Agaricomycotina&lt;/i&gt;, 13 new species occurred in 12 genera in the &lt;i&gt;Pucciniomycotina&lt;/i&gt;, three new species were distributed in three genera in the &lt;i&gt;Ustilaginomycotina,&lt;/i&gt; and eight new species were classified in seven newly established genera. One new family was also proposed based on one of these new genera. The analyses revealed several inaccurate species names attributed to genomes deposited in GenBank, indicating the necessity of a more rigorous quality checks of the genomes deposited in the public databases. &lt;b&gt;Taxonomic novelties: New family:&lt;/b&gt; &lt;i&gt;Vankyiozymaceae&lt;/i&gt; Q.-M. Wang; &lt;b&gt;New genera:&lt;/b&gt; &lt;i&gt;Baiomyces&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Bauerozyma&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Fengyania&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Foliozyma&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Litoriozyma&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Nakaseozyma&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Vankyiozyma&lt;/i&gt; Q.-M. Wang; &lt;b&gt;New species:&lt;/b&gt; &lt;i&gt;Baiomyces sejilaensis&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Bauerozyma artemisiae&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Boekhoutia foliicola&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Buckleyzyma pseudoaurantiaca&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Carlosrosaea betulae&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Carlosrosaea rhododendri&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Carlosrosaea yunnanensis&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Chrysozyma quercicola&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Curvibasidium pini&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Cystobasidium cunninghamiae&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Derxomyces foliicola&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Derxomyces motuoensis&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Derxomyces orientalis&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Derxomyces paracylindricus&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Exobasidium lijiangense&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Fengyania pteridophytorum&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Foliozyma liliicola&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Halobasidium phyllophilum&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Hannaella artemisiae&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Hannaella pteridophytorum&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Hannaella urticae&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Holtermannia pseudosaccardoi&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Kockovaella cariosiligni&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Kockovaella foliicola&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Kondoa tibetensis&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Kwoniella hippophaes&lt;/i&gt; Q.-M. Wang, &lt;i&gt;Kwonie","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"57-153"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663428/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sporocadaceae revisited. Sporocadaceae再现。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-27 DOI: 10.3114/sim.2024.109.03
P Razaghi, M Raza, S L Han, Z Y Ma, L Cai, P Zhao, Q Chen, D Phurbu, F Liu
<p><p><i>Sporocadaceae</i> is a species-rich and cosmopolitan fungal family including species of plant pathogens, endophytes or saprobes, and parasites of humans and animals. The taxonomy of <i>Sporocadaceae</i> has recently been revised using a polyphasic approach. However, much remains unknown about the diversity of species and their host associations. A collection of 488 strains, mostly from China and associated with 129 host plant species, was studied based on morphological comparisons and multi-locus (LSU, ITS, <i>tef-1α</i>, <i>tub2</i>, and <i>rpb2</i>) phylogenies. Our results revealed that they belonged to 86 species, one new genus (<i>Cavernicola gen. nov</i>.) and seven known genera, including <i>Discosia</i>, <i>Monochaetia</i>, <i>Neopestalotiopsis</i>, <i>Pestalotiopsis, Seimatosporium</i>, <i>Seiridium</i> and <i>Sporocadus</i>. Of these, 43 new species and three new combinations (<i>Dis</i>. <i>kaki</i>, <i>Mon</i>. <i>bulbophylli</i>, and <i>Neo</i>. <i>keteleeriae</i>) are proposed in this paper. In addition, <i>Neo. vaccinii</i>, <i>Pes. kaki</i> and <i>Pes. nanjingensis</i> are synonymised under <i>Neo. hispanica</i>, <i>Pes. menhaiensis</i> and <i>Pes. sichuanensis</i>, respectively. We also corrected seven problematic sequences of type materials of previously published species, namely <i>Neo</i>. <i>iranensis</i> (<i>tef-1α</i>, ITS, <i>tub2</i>), <i>Pes</i>. <i>jesteri</i> (<i>tef-1α</i>), <i>Pes</i>. <i>photinicola</i> (ITS, <i>tub2</i>) and <i>Pes</i>. <i>yunnanensis</i> (ITS). Based on this study, <i>Pestalotiopsis</i> and <i>Neopestalotiopsis</i> are the most commonly detected genera within the <i>Sporocadaceae</i> family, associated with 84 and 70 plant species, respectively. Furthermore, considering the importance of <i>Sporocadaceae</i> and the fact that commonly used loci provide little valid information for species delimitation in this family, especially for <i>Neopestalotiopsis</i> and <i>Pestalotiopsis</i>, we initiated a phylogenomic project in this study. It will not only contribute to the knowledge of species boundaries but will also provide an important basis for evolutionary studies and research on secondary metabolites in <i>Sporocadaceae</i>. <b>Taxonomic novelties: New genus:</b> <i>Cavernicola</i> P. Razaghi, F. Liu & L. Cai. <b>New species:</b> <i>Cavernicola guangxiensis</i> P. Razaghi, F. Liu & L. Cai, <i>Discosia ascidiata</i> P. Razaghi, F. Liu & L. Cai, <i>Discosia jiangxiensis</i> P. Razaghi, F. Liu & L. Cai, <i>Discosia navicularis</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis ageratinae</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis castanopsidis</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis celtidis</i> P. Razaghi, F. Liu, M. Raza & L. Cai, <i>Neopestalotiopsis collariata</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis dimorphospora</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis dolichoconidiophora</i> P. Razaghi, F. Liu & L. Cai, <i>Neopestalotiopsis fijiens
孢子菌科是一个种类丰富、分布广泛的真菌科,包括植物病原菌、内生菌或腐生菌以及人类和动物的寄生虫。孢子菌科的分类学最近用多相方法进行了修订。然而,关于物种的多样性和它们的宿主关联,还有很多未知之处。通过形态学比较和多位点(LSU、ITS、tef-1α、tub2和rpb2)系统发育分析,对来自中国、与129种寄主植物相关的488株菌株进行了研究。结果表明,它们分属86种,新属1个,已知属7个,包括Discosia、Monochaetia、Neopestalotiopsis、Pestalotiopsis、Seimatosporium、Seiridium和Sporocadus。其中,有43个新种和3个新组合(diss . kaki, Mon. bulbophylli,和Neo. kaki)。本文提出了油杉属植物(Keteleeriae)。此外,Neo。vaccinii, Pes。卡其和佩斯。nanjingensis是Neo的同义词。hispanica, Pes。menhaiensis和Pes。分别sichuanensis。我们还纠正了先前发表的物种(即Neo)的7个有问题的类型材料序列。iranensis (tef-1α, ITS, tub2), Pes。jesteri (tef-1α);photinicola (ITS, tub2)和Pes。云南裂(它)。本研究发现拟盘多毛孢属和新盘多毛孢属是Sporocadaceae科中最常见的属,分别与84种和70种植物有关。此外,考虑到Sporocadaceae的重要性以及常用位点对该科物种划分的有效信息很少,特别是对于新拟盘多毛孢和拟盘多毛孢,我们在本研究中启动了系统基因组项目。这不仅有助于了解孢子菌科的物种边界,而且为孢子菌科次生代谢产物的进化研究和研究提供了重要依据。分类学新颖性:新属:巨穴藻(Cavernicola P. Razaghi),刘云峰,蔡丽玲。新物种:Cavernicola guangxiensis p . Razaghi f·刘& l . Cai Discosia ascidiata p . Razaghi f·刘& l . Cai Discosia jiangxiensis p . Razaghi f·刘& l . Cai Discosia navicularis p . Razaghi f·刘& l . Cai Neopestalotiopsis ageratinae p . Razaghi f·刘& l . Cai Neopestalotiopsis castanopsidis p . Razaghi f·刘& l . Cai Neopestalotiopsis celtidis p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis collariata p . Razaghi f·刘& l . Cai Neopestalotiopsis dimorphospora p . Razaghif·刘& l . Cai Neopestalotiopsis dolichoconidiophora p . Razaghi f·刘& l . Cai Neopestalotiopsis fijiensis p . Razaghi f·刘& l . Cai Neopestalotiopsis fimbriata p . Razaghi f·刘& l . Cai Neopestalotiopsis fuzhouensis p . Razaghi f·刘& l . Cai Neopestalotiopsis guangxiensis p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis guizhouensis p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis jiangxiensis p . Razaghi f·刘& l . Cai Neopestalotiopsis liquidambaris p . Razaghif·刘& l . Cai Neopestalotiopsis machili p . Razaghi f·刘& l . Cai Neopestalotiopsis megabetaspora p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis念珠p . Razaghi f·刘& l . Cai Neopestalotiopsis nanningensis p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis phyllostachydis p . Razaghi f . Liu m . Raza & l . Cai Neopestalotiopsis poae p . Razaghi f·刘& l . Cai Neopestalotiopsis smilacis p . Razaghi f . Liu m . Raza & l .蔡Pestalotiopsis alloschemones p . Razaghi f·刘& l . Cai Pestalotiopsis美国p . Razaghi f·刘& l . Cai Pestalotiopsis biappendiculata p . Razaghi f·刘& l . Cai Pestalotiopsis cratoxyli p . Razaghi f . Liu m . Raza & l . Cai Pestalotiopsis exudata p . Razaghi f·刘& l . Cai Pestalotiopsis梭杆菌属p . Razaghi f·刘& l . Cai Pestalotiopsis ganzhouensis p . Razaghi f·刘& l . Cai Pestalotiopsis leucospermi p . Razaghi f·刘& l . Cai Pestalotiopsis兜水母目p . Razaghif·刘& l . Cai Pestalotiopsis machili p . Razaghi f·刘& l . Cai Pestalotiopsis multiappendiculata p . Razaghi f·刘& l . Cai Pestalotiopsis pruni p . Razaghi f·刘& l . Cai Pestalotiopsis rubrae p . Razaghi f . Liu m . Raza & l . Cai Pestalotiopsis wulichongensis p . Razaghi f . Liu m . Raza & l . Cai Seimatosporium tibetense p . Razaghi f·刘& l . Cai Seiridium rhododendri p . Raz
{"title":"<i>Sporocadaceae</i> revisited.","authors":"P Razaghi, M Raza, S L Han, Z Y Ma, L Cai, P Zhao, Q Chen, D Phurbu, F Liu","doi":"10.3114/sim.2024.109.03","DOIUrl":"10.3114/sim.2024.109.03","url":null,"abstract":"&lt;p&gt;&lt;p&gt;&lt;i&gt;Sporocadaceae&lt;/i&gt; is a species-rich and cosmopolitan fungal family including species of plant pathogens, endophytes or saprobes, and parasites of humans and animals. The taxonomy of &lt;i&gt;Sporocadaceae&lt;/i&gt; has recently been revised using a polyphasic approach. However, much remains unknown about the diversity of species and their host associations. A collection of 488 strains, mostly from China and associated with 129 host plant species, was studied based on morphological comparisons and multi-locus (LSU, ITS, &lt;i&gt;tef-1α&lt;/i&gt;, &lt;i&gt;tub2&lt;/i&gt;, and &lt;i&gt;rpb2&lt;/i&gt;) phylogenies. Our results revealed that they belonged to 86 species, one new genus (&lt;i&gt;Cavernicola gen. nov&lt;/i&gt;.) and seven known genera, including &lt;i&gt;Discosia&lt;/i&gt;, &lt;i&gt;Monochaetia&lt;/i&gt;, &lt;i&gt;Neopestalotiopsis&lt;/i&gt;, &lt;i&gt;Pestalotiopsis, Seimatosporium&lt;/i&gt;, &lt;i&gt;Seiridium&lt;/i&gt; and &lt;i&gt;Sporocadus&lt;/i&gt;. Of these, 43 new species and three new combinations (&lt;i&gt;Dis&lt;/i&gt;. &lt;i&gt;kaki&lt;/i&gt;, &lt;i&gt;Mon&lt;/i&gt;. &lt;i&gt;bulbophylli&lt;/i&gt;, and &lt;i&gt;Neo&lt;/i&gt;. &lt;i&gt;keteleeriae&lt;/i&gt;) are proposed in this paper. In addition, &lt;i&gt;Neo. vaccinii&lt;/i&gt;, &lt;i&gt;Pes. kaki&lt;/i&gt; and &lt;i&gt;Pes. nanjingensis&lt;/i&gt; are synonymised under &lt;i&gt;Neo. hispanica&lt;/i&gt;, &lt;i&gt;Pes. menhaiensis&lt;/i&gt; and &lt;i&gt;Pes. sichuanensis&lt;/i&gt;, respectively. We also corrected seven problematic sequences of type materials of previously published species, namely &lt;i&gt;Neo&lt;/i&gt;. &lt;i&gt;iranensis&lt;/i&gt; (&lt;i&gt;tef-1α&lt;/i&gt;, ITS, &lt;i&gt;tub2&lt;/i&gt;), &lt;i&gt;Pes&lt;/i&gt;. &lt;i&gt;jesteri&lt;/i&gt; (&lt;i&gt;tef-1α&lt;/i&gt;), &lt;i&gt;Pes&lt;/i&gt;. &lt;i&gt;photinicola&lt;/i&gt; (ITS, &lt;i&gt;tub2&lt;/i&gt;) and &lt;i&gt;Pes&lt;/i&gt;. &lt;i&gt;yunnanensis&lt;/i&gt; (ITS). Based on this study, &lt;i&gt;Pestalotiopsis&lt;/i&gt; and &lt;i&gt;Neopestalotiopsis&lt;/i&gt; are the most commonly detected genera within the &lt;i&gt;Sporocadaceae&lt;/i&gt; family, associated with 84 and 70 plant species, respectively. Furthermore, considering the importance of &lt;i&gt;Sporocadaceae&lt;/i&gt; and the fact that commonly used loci provide little valid information for species delimitation in this family, especially for &lt;i&gt;Neopestalotiopsis&lt;/i&gt; and &lt;i&gt;Pestalotiopsis&lt;/i&gt;, we initiated a phylogenomic project in this study. It will not only contribute to the knowledge of species boundaries but will also provide an important basis for evolutionary studies and research on secondary metabolites in &lt;i&gt;Sporocadaceae&lt;/i&gt;. &lt;b&gt;Taxonomic novelties: New genus:&lt;/b&gt; &lt;i&gt;Cavernicola&lt;/i&gt; P. Razaghi, F. Liu & L. Cai. &lt;b&gt;New species:&lt;/b&gt; &lt;i&gt;Cavernicola guangxiensis&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Discosia ascidiata&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Discosia jiangxiensis&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Discosia navicularis&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis ageratinae&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis castanopsidis&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis celtidis&lt;/i&gt; P. Razaghi, F. Liu, M. Raza & L. Cai, &lt;i&gt;Neopestalotiopsis collariata&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis dimorphospora&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis dolichoconidiophora&lt;/i&gt; P. Razaghi, F. Liu & L. Cai, &lt;i&gt;Neopestalotiopsis fijiens","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"109 ","pages":"155-272"},"PeriodicalIF":14.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663424/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142882999","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
What are the 100 most cited fungal genera? 被引用最多的 100 个真菌属是什么?
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-15 DOI: 10.3114/sim.2024.108.01
C S Bhunjun, Y J Chen, C Phukhamsakda, T Boekhout, J Z Groenewald, E H C McKenzie, E C Francisco, J C Frisvad, M Groenewald, V G Hurdeal, J Luangsa-Ard, G Perrone, C M Visagie, F Y Bai, J Błaszkowski, U Braun, F A de Souza, M B de Queiroz, A K Dutta, D Gonkhom, B T Goto, V Guarnaccia, F Hagen, J Houbraken, M A Lachance, J J Li, K Y Luo, F Magurno, S Mongkolsamrit, V Robert, N Roy, S Tibpromma, D N Wanasinghe, D Q Wang, D P Wei, C L Zhao, W Aiphuk, O Ajayi-Oyetunde, T D Arantes, J C Araujo, D Begerow, M Bakhshi, R N Barbosa, F H Behrens, K Bensch, J D P Bezerra, P Bilański, C A Bradley, B Bubner, T I Burgess, B Buyck, N Čadež, L Cai, F J S Calaça, L J Campbell, P Chaverri, Y Y Chen, K W T Chethana, B Coetzee, M M Costa, Q Chen, F A Custódio, Y C Dai, U Damm, A L C M A Santiago, R M De Miccolis Angelini, J Dijksterhuis, A J Dissanayake, M Doilom, W Dong, E Álvarez-Duarte, M Fischer, A J Gajanayake, J Gené, D Gomdola, A A M Gomes, G Hausner, M Q He, L Hou, I Iturrieta-González, F Jami, R Jankowiak, R S Jayawardena, H Kandemir, L Kiss, N Kobmoo, T Kowalski, L Landi, C G Lin, J K Liu, X B Liu, M Loizides, T Luangharn, S S N Maharachchikumbura, G J Makhathini Mkhwanazi, I S Manawasinghe, Y Marin-Felix, A R McTaggart, P A Moreau, O V Morozova, L Mostert, H D Osiewacz, D Pem, R Phookamsak, S Pollastro, A Pordel, C Poyntner, A J L Phillips, M Phonemany, I Promputtha, A R Rathnayaka, A M Rodrigues, G Romanazzi, L Rothmann, C Salgado-Salazar, M Sandoval-Denis, S J Saupe, M Scholler, P Scott, R G Shivas, P Silar, A G S Silva-Filho, C M Souza-Motta, C F J Spies, A M Stchigel, K Sterflinger, R C Summerbell, T Y Svetasheva, S Takamatsu, B Theelen, R C Theodoro, M Thines, N Thongklang, R Torres, B Turchetti, T van den Brule, X W Wang, F Wartchow, S Welti, S N Wijesinghe, F Wu, R Xu, Z L Yang, N Yilmaz, A Yurkov, L Zhao, R L Zhao, N Zhou, K D Hyde, P W Crous
<p><p>The global diversity of fungi has been estimated between 2 to 11 million species, of which only about 155 000 have been named. Most fungi are invisible to the unaided eye, but they represent a major component of biodiversity on our planet, and play essential ecological roles, supporting life as we know it. Although approximately 20 000 fungal genera are presently recognised, the ecology of most remains undetermined. Despite all this diversity, the mycological community actively researches some fungal genera more commonly than others. This poses an interesting question: why have some fungal genera impacted mycology and related fields more than others? To address this issue, we conducted a bibliometric analysis to identify the top 100 most cited fungal genera. A thorough database search of the Web of Science, Google Scholar, and PubMed was performed to establish which genera are most cited. The most cited 10 genera are <i>Saccharomyces</i>, <i>Candida</i>, <i>Aspergillus</i>, <i>Fusarium</i>, <i>Penicillium</i>, <i>Trichoderma</i>, <i>Botrytis</i>, <i>Pichia</i>, <i>Cryptococcus</i> and <i>Alternaria</i>. Case studies are presented for the 100 most cited genera with general background, notes on their ecology and economic significance and important research advances. This paper provides a historic overview of scientific research of these genera and the prospect for further research. <b>Citation:</b> Bhunjun CS, Chen YJ, Phukhamsakda C, Boekhout T, Groenewald JZ, McKenzie EHC, Francisco EC, Frisvad JC, Groenewald M, Hurdeal VG, Luangsa-ard J, Perrone G, Visagie CM, Bai FY, Błaszkowski J, Braun U, de Souza FA, de Queiroz MB, Dutta AK, Gonkhom D, Goto BT, Guarnaccia V, Hagen F, Houbraken J, Lachance MA, Li JJ, Luo KY, Magurno F, Mongkolsamrit S, Robert V, Roy N, Tibpromma S, Wanasinghe DN, Wang DQ, Wei DP, Zhao CL, Aiphuk W, Ajayi-Oyetunde O, Arantes TD, Araujo JC, Begerow D, Bakhshi M, Barbosa RN, Behrens FH, Bensch K, Bezerra JDP, Bilański P, Bradley CA, Bubner B, Burgess TI, Buyck B, Čadež N, Cai L, Calaça FJS, Campbell LJ, Chaverri P, Chen YY, Chethana KWT, Coetzee B, Costa MM, Chen Q, Custódio FA, Dai YC, Damm U, de Azevedo Santiago ALCM, De Miccolis Angelini RM, Dijksterhuis J, Dissanayake AJ, Doilom M, Dong W, Alvarez-Duarte E, Fischer M, Gajanayake AJ, Gené J, Gomdola D, Gomes AAM, Hausner G, He MQ, Hou L, Iturrieta-González I, Jami F, Jankowiak R, Jayawardena RS, Kandemir H, Kiss L, Kobmoo N, Kowalski T, Landi L, Lin CG, Liu JK, Liu XB, Loizides M, Luangharn T, Maharachchikumbura SSN, Makhathini Mkhwanazi GJ, Manawasinghe IS, Marin-Felix Y, McTaggart AR, Moreau PA, Morozova OV, Mostert L, Osiewacz HD, Pem D, Phookamsak R, Pollastro S, Pordel A, Poyntner C, Phillips AJL, Phonemany M, Promputtha I, Rathnayaka AR, Rodrigues AM, Romanazzi G, Rothmann L, Salgado-Salazar C, Sandoval-Denis M, Saupe SJ, Scholler M, Scott P, Shivas RG, Silar P, Souza-Motta CM, Silva-Filho AGS, Spies CFJ, Stchigel AM, Sterflinger K, Summerbell RC, Svetasheva TY, T
据估计,全球真菌的多样性在 200 万到 1100 万种之间,其中只有约 155 000 种已被命名。大多数真菌是肉眼看不见的,但它们却是地球生物多样性的主要组成部分,并发挥着重要的生态作用,支持着我们所知的生命。尽管目前已确认的真菌属大约有 2 万个,但大多数真菌的生态学仍未确定。尽管真菌种类繁多,但真菌学界对某些真菌属的研究却比其他真菌属更为活跃。这就提出了一个有趣的问题:为什么有些真菌属对真菌学及相关领域的影响比其他真菌属更大?为了解决这个问题,我们进行了文献计量分析,以确定被引用次数最多的前 100 个真菌属。我们对 Web of Science、Google Scholar 和 PubMed 进行了全面的数据库搜索,以确定哪些属的引用率最高。被引用最多的 10 个菌属分别是酵母菌属、念珠菌属、曲霉菌属、镰刀菌属、青霉属、毛霉菌属、灰霉属、毕赤菌属、隐球菌属和交替孢属。本文介绍了被引用次数最多的 100 个菌属的案例研究,包括一般背景、生态学和经济意义说明以及重要的研究进展。本文对这些菌属的科学研究进行了历史性概述,并展望了进一步研究的前景。引用:Bhunjun CS, Chen YJ, Phukhamsakda C, Boekhout T, Groenewald JZ, McKenzie EHC, Francisco EC, Frisvad JC, Groenewald M, Hurdeal VG, Luangsa-ard J, Perrone G, Visagie CM, Bai FY, Błaszkowski J, Braun U, de Souza FA, de Queiroz MB、Dutta AK、 Gonkhom D、 Goto BT、 Guarnaccia V、 Hagen F、 Houbraken J、 Lachance MA、 Li JJ、 Luo KY、 Magurno F、 Mongkolsamrit S、 Robert V、 Roy N、 Tibpromma S、 Wanasinghe DN、 Wang DQ、 Wei DP、 Zhao CL、 Aiphuk W、 Ajayi-Oyetunde O、Arantes TD, Araujo JC, Begerow D, Bakhshi M, Barbosa RN, Behrens FH, Bensch K, Bezerra JDP, Bilański P, Bradley CA, Bubner B, Burgess TI, Buyck B, Čadež N, Cai L, Calaça FJS, Campbell LJ, Chaverri P, Chen YY, Chethana KWT、Coetzee B、Costa MM、Chen Q、Custódio FA、Dai YC、Damm U、de Azevedo Santiago ALCM、De Miccolis Angelini RM、Dijksterhuis J、Dissanayake AJ、Doilom M、Dong W、Alvarez-Duarte E、Fischer M、Gajanayake AJ、Gené J、Gomdola D、Gomes AAM、Hausner G、He MQ、Hou L、Iturrieta-González I、Jami F、Jankowiak R、Jayawardena RS、Kandemir H、Kiss L、Kobmoo N、Kowalski T、Landi L、Lin CG、Liu JK、Liu XB、Loizides M、Luangharn T、Maharachchikumbura SSN、Makhathini Mkhwanazi GJ、Manawasinghe IS, Marin-Felix Y, McTaggart AR, Moreau PA, Morozova OV, Mostert L, Osiewacz HD, Pem D, Phookamsak R, Pollastro S, Pordel A, Poyntner C, Phillips AJL, Phonemany M, Promputtha I, Rathnayaka AR, Rodrigues AM、Romanazzi G、Rothmann L、Salgado-Salazar C、Sandoval-Denis M、Saupe SJ、Scholler M、Scott P、Shivas RG、Silar P、Souza-Motta CM、Silva-Filho AGS、Spies CFJ、Stchigel AM、Sterflinger K、Summerbell RC、Svetasheva TY、Takamatsu S、Theelen B, Theodoro RC, Thines M, Thongklang N, Torres R, Turchetti B, van den Brule T, Wang XW, Wartchow F, Welti S, Wijesinghe SN, Wu F, Xu R, Yang ZL, Yilmaz N, Yurkov A, Zhao L, Zhao RL, Zhou N, Hyde KD, Crous PW (2024).被引用最多的 100 个真菌属是什么?真菌学研究》108: 1-411. doi: 10.3114/sim.2024.108.01.
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Most fungi are invisible to the unaided eye, but they represent a major component of biodiversity on our planet, and play essential ecological roles, supporting life as we know it. Although approximately 20 000 fungal genera are presently recognised, the ecology of most remains undetermined. Despite all this diversity, the mycological community actively researches some fungal genera more commonly than others. This poses an interesting question: why have some fungal genera impacted mycology and related fields more than others? To address this issue, we conducted a bibliometric analysis to identify the top 100 most cited fungal genera. A thorough database search of the Web of Science, Google Scholar, and PubMed was performed to establish which genera are most cited. The most cited 10 genera are &lt;i&gt;Saccharomyces&lt;/i&gt;, &lt;i&gt;Candida&lt;/i&gt;, &lt;i&gt;Aspergillus&lt;/i&gt;, &lt;i&gt;Fusarium&lt;/i&gt;, &lt;i&gt;Penicillium&lt;/i&gt;, &lt;i&gt;Trichoderma&lt;/i&gt;, &lt;i&gt;Botrytis&lt;/i&gt;, &lt;i&gt;Pichia&lt;/i&gt;, &lt;i&gt;Cryptococcus&lt;/i&gt; and &lt;i&gt;Alternaria&lt;/i&gt;. Case studies are presented for the 100 most cited genera with general background, notes on their ecology and economic significance and important research advances. This paper provides a historic overview of scientific research of these genera and the prospect for further research. &lt;b&gt;Citation:&lt;/b&gt; Bhunjun CS, Chen YJ, Phukhamsakda C, Boekhout T, Groenewald JZ, McKenzie EHC, Francisco EC, Frisvad JC, Groenewald M, Hurdeal VG, Luangsa-ard J, Perrone G, Visagie CM, Bai FY, Błaszkowski J, Braun U, de Souza FA, de Queiroz MB, Dutta AK, Gonkhom D, Goto BT, Guarnaccia V, Hagen F, Houbraken J, Lachance MA, Li JJ, Luo KY, Magurno F, Mongkolsamrit S, Robert V, Roy N, Tibpromma S, Wanasinghe DN, Wang DQ, Wei DP, Zhao CL, Aiphuk W, Ajayi-Oyetunde O, Arantes TD, Araujo JC, Begerow D, Bakhshi M, Barbosa RN, Behrens FH, Bensch K, Bezerra JDP, Bilański P, Bradley CA, Bubner B, Burgess TI, Buyck B, Čadež N, Cai L, Calaça FJS, Campbell LJ, Chaverri P, Chen YY, Chethana KWT, Coetzee B, Costa MM, Chen Q, Custódio FA, Dai YC, Damm U, de Azevedo Santiago ALCM, De Miccolis Angelini RM, Dijksterhuis J, Dissanayake AJ, Doilom M, Dong W, Alvarez-Duarte E, Fischer M, Gajanayake AJ, Gené J, Gomdola D, Gomes AAM, Hausner G, He MQ, Hou L, Iturrieta-González I, Jami F, Jankowiak R, Jayawardena RS, Kandemir H, Kiss L, Kobmoo N, Kowalski T, Landi L, Lin CG, Liu JK, Liu XB, Loizides M, Luangharn T, Maharachchikumbura SSN, Makhathini Mkhwanazi GJ, Manawasinghe IS, Marin-Felix Y, McTaggart AR, Moreau PA, Morozova OV, Mostert L, Osiewacz HD, Pem D, Phookamsak R, Pollastro S, Pordel A, Poyntner C, Phillips AJL, Phonemany M, Promputtha I, Rathnayaka AR, Rodrigues AM, Romanazzi G, Rothmann L, Salgado-Salazar C, Sandoval-Denis M, Saupe SJ, Scholler M, Scott P, Shivas RG, Silar P, Souza-Motta CM, Silva-Filho AGS, Spies CFJ, Stchigel AM, Sterflinger K, Summerbell RC, Svetasheva TY, T","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"108 ","pages":"1-411"},"PeriodicalIF":14.1,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11293126/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141890093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. 全球森林调查揭示了 Phytophthora major Clade 2 中的 43 个新物种,对该属的进化和生物地理学以及全球植物生物安全具有重要意义。
IF 14.1 1区 生物学 Q1 MYCOLOGY Pub Date : 2024-03-01 Epub Date: 2024-02-27 DOI: 10.3114/sim.2024.107.04
T Jung, I Milenković, Y Balci, J Janoušek, T Kudláček, Z Á Nagy, B Baharuddin, J Bakonyi, K D Broders, S O Cacciola, T-T Chang, N M Chi, T Corcobado, A Cravador, B Đorđević, A Durán, M Ferreira, C-H Fu, L Garcia, A Hieno, H-H Ho, C Hong, M Junaid, K Kageyama, T Kuswinanti, C Maia, T Májek, H Masuya, G Magnano di San Lio, B Mendieta-Araica, N Nasri, L S S Oliveira, A Pane, A Pérez-Sierra, A Rosmana, E Sanfuentes von Stowasser, B Scanu, R Singh, Z Stanivuković, M Tarigan, P Q Thu, Z Tomić, M Tomšovský, S Uematsu, J F Webber, H-C Zeng, F-C Zheng, C M Brasier, M Horta Jung
<p><p>During 25 surveys of global <i>Phytophthora</i> diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of <i>Phytophthora</i> major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels <i>ca</i>. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the <i>Phytophthora</i> clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single <i>Phytophthora</i> clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in <i>Phytophthora</i>. <b>Taxonomic novelties: New species:</b> <i>Phytophthora amamensis</i> T. Jung, K. Kageyama, H. Masuya & S. Uematsu, <i>Phytophthora angustata</i> T. Jung, L. Garcia, B. Mendieta-Araica, & Y. Balci, <i>Phytophthora balkanensis</i> I. Milenković, Ž. Tomić, T. Jung & M. Horta Jung, <i>Phytophthora borneensis</i> T. Jung, A. Durán, M. Tarigan & M. Horta Jung, <i>Phytophthora calidophila</i> T. Jung, Y. Balci, L. Garcia & B. Mendieta-Araica, <i>Phytophthora catenulata</i> T. Jung, T.-T. Chang, N.M. Chi & M. Horta Jung, <i>Phytophthora celeris</i> T. Jung, L. Oliveira, M. Tarigan & I. Milenković, <i>Phytophthora curvata</i> T. Jung, A. Hieno, H. Masuya & M.
在 1998 年至 2020 年期间进行的 25 次全球疫霉多样性调查中,在欧洲、东南亚、东亚和美洲的自然生态系统以及偶尔在苗圃和外植植物中发现了 43 个新物种。根据 9 个核基因区和 4 个线粒体基因区的多基因系统进化,它们被归入已知的 6 个亚支系中的 5 个,即 Phytophthora 主要支系 2 的 2a-c、e 和 f,以及新的亚支系 2g。该支系的进化史似乎涉及三个现存亚支系(2c、2e 和 2f)在鹅卵石万年前的分化,这三个亚支系都在不同的大陆上有不同的自然分布,包括生活方式为土生和水生的物种,此外,支系 2c 中还有一些部分为气生的物种;亚支系 2a 和 2g 在鹅卵石万年后分别在东南亚/东亚和南美洲从它们的共同祖先进化而来,支系 2b 在鹅卵石万年后从它们的共同祖先进化而来。支系 2g 中的物种在土壤中栖息,而支系 2b 则既包括在土壤中栖息的物种,也包括在空中栖息的物种。支系 2a 进一步向空中生活方式演化,只包括主要或部分在空中生活的物种。根据较高的核杂合度水平,2a 支系和 2b 支系中约 38% 的类群可能是某种形式的杂交种,A1/A2 繁殖系统和空中生活方式可能有利于这种杂交。间接证据表明,支系 2 中现已描述的 93 个物种和非正式指定的类群都是异地非适应性辐射和同地适应性辐射的结果。它们代表了整个噬菌属支系中的大多数形态和生理特征、繁殖系统、生活方式和寄主特化形式,显示了该属强大的生物凝聚力。在一个疫霉支系中发现了 43 个以前未知的物种,这凸显出在未知病原体对森林和自然生态系统的威胁程度方面严重缺乏信息,强调了主要根据命名生物清单制定植物生物安全协议的风险。需要在非洲、亚洲、中美洲和南美洲尚未调查的地区的自然生态系统中进行更多调查,以揭示该支系的全部多样性以及驱动疫霉菌多样性、物种和适应性的因素。分类学上的新发现:新物种:Phytophthora amamensis T. Jung, K. Kageyama, H. Masuya & S. Uematsu, Phytophthora angustata T. Jung, L. Garcia, B. Mendieta-Araica, & Y. Balci, Phytophthora balkanensis I. Milenković, Ž.Tomić, T. Jung & M. Horta Jung, Phytophthora borneensis T. Jung, A. Durán, M. Tarigan & M. Horta Jung, Phytophthora calidophila T. Jung, Y. Balci, L. Garcia & B. Mendieta-Araica, Phytophthora catenulata T. Jung, T.-T. Chang, N.M. Chi & M. Horta Jung, Phytophthora catenulata T. Jung, T.-T.T. Jung, T.-T. Chang, N.M. Chi & M. Horta Jung, Phytophthora celeris T. Jung, L. Oliveira, M. Tarigan & I. Milenković, Phytophthora curvata T. Jung, A. Hieno, H. Masuya & M. Horta Jung, Phytophthora distorta T. Jung, A. Durán, E. Sanfuentes von Stowasser & M. Horta Jung, Phytophthora distorta T. Jung, A. Durán, E. Sanfuentes von Stowasser & M. Horta Jung.Horta Jung, Phytophthora excentrica T. Jung, S. Uematsu, K. Kageyama & C.M. Brasier, Phytophthora falcata T. Jung, K. Kageyama, S. Uematsu & M. Horta Jung, Phytophthora fansipanensis T. Jung, N.M. Chi, T. Corcobado & C.M.Brasier, Phytophthora frigidophila T. Jung, Y. Balci, K. Broders & I. Milenković, Phytophthora furcata T. Jung, N.M. Chi, I. Milenković & M. Horta Jung, Phytophthora inclinata N.M. Chi, T. Jung, M. Horta Jung & I.M. Milenković、Phytophthora indonesiensis T. Jung、M. Tarigan、L. Oliveira & I. Milenković、Phytophthora japonensis T. Jung、A. Hieno、H. Masuya & J.F. Webber、Phytophthora limosa T. Corcobado、T. Majek、M. Ferreira & T. Jung、Phytophthora macroglobulosa H.- C. Jung、Phytophthora macroglobulosa H.- J.F. Webber。C.Zeng, H.-H. Ho, F.-C.Ho, F.-C. Zheng & T. Jung, Phytophthora macroglobulosaZeng, H.-H. Ho, F.-C. Zheng & T. Jung, Phytophthora montana T.Jung, Y. Balci, K. Broders & M. Horta Jung, Phytophthora multipapillata T. Jung, M. Tarigan, I. Milenković & M. Horta Jung, Phytophthora multiplex T. Jung, Y. Balci, K. Broders & M. Horta Jung, Phytophthora multiplex.Horta Jung、Phytophthora nimia T. Jung、H. Masuya、A. Hieno & C.M.Brasier、Phytophthora oblonga T. Jung、S. Uematsu、K. Kageyama & C.M.Brasier、Phytophthora obovoidea T. Jung、Y. Balc
{"title":"Worldwide forest surveys reveal forty-three new species in <i>Phytophthora</i> major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity.","authors":"T Jung, I Milenković, Y Balci, J Janoušek, T Kudláček, Z Á Nagy, B Baharuddin, J Bakonyi, K D Broders, S O Cacciola, T-T Chang, N M Chi, T Corcobado, A Cravador, B Đorđević, A Durán, M Ferreira, C-H Fu, L Garcia, A Hieno, H-H Ho, C Hong, M Junaid, K Kageyama, T Kuswinanti, C Maia, T Májek, H Masuya, G Magnano di San Lio, B Mendieta-Araica, N Nasri, L S S Oliveira, A Pane, A Pérez-Sierra, A Rosmana, E Sanfuentes von Stowasser, B Scanu, R Singh, Z Stanivuković, M Tarigan, P Q Thu, Z Tomić, M Tomšovský, S Uematsu, J F Webber, H-C Zeng, F-C Zheng, C M Brasier, M Horta Jung","doi":"10.3114/sim.2024.107.04","DOIUrl":"10.3114/sim.2024.107.04","url":null,"abstract":"&lt;p&gt;&lt;p&gt;During 25 surveys of global &lt;i&gt;Phytophthora&lt;/i&gt; diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of &lt;i&gt;Phytophthora&lt;/i&gt; major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels &lt;i&gt;ca&lt;/i&gt;. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the &lt;i&gt;Phytophthora&lt;/i&gt; clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single &lt;i&gt;Phytophthora&lt;/i&gt; clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in &lt;i&gt;Phytophthora&lt;/i&gt;. &lt;b&gt;Taxonomic novelties: New species:&lt;/b&gt; &lt;i&gt;Phytophthora amamensis&lt;/i&gt; T. Jung, K. Kageyama, H. Masuya & S. Uematsu, &lt;i&gt;Phytophthora angustata&lt;/i&gt; T. Jung, L. Garcia, B. Mendieta-Araica, & Y. Balci, &lt;i&gt;Phytophthora balkanensis&lt;/i&gt; I. Milenković, Ž. Tomić, T. Jung & M. Horta Jung, &lt;i&gt;Phytophthora borneensis&lt;/i&gt; T. Jung, A. Durán, M. Tarigan & M. Horta Jung, &lt;i&gt;Phytophthora calidophila&lt;/i&gt; T. Jung, Y. Balci, L. Garcia & B. Mendieta-Araica, &lt;i&gt;Phytophthora catenulata&lt;/i&gt; T. Jung, T.-T. Chang, N.M. Chi & M. Horta Jung, &lt;i&gt;Phytophthora celeris&lt;/i&gt; T. Jung, L. Oliveira, M. Tarigan & I. Milenković, &lt;i&gt;Phytophthora curvata&lt;/i&gt; T. Jung, A. Hieno, H. Masuya & M. ","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"107 ","pages":"251-388"},"PeriodicalIF":14.1,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11003442/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140871957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Studies in Mycology
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