Toward a More General Understanding of Bohr’s Complementarity: Insights from Modeling of Ion Channels

IF 1.4 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Acta Biotheoretica Pub Date : 2021-09-28 DOI:10.1007/s10441-021-09424-0
Srdjan Kesić
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引用次数: 1

Abstract

Some contemporary theorists such as Mazzocchi, Theise and Kafatos are convinced that the reformed complementarity may redefine how we might exploit the complexity theory in 21st-century life sciences research. However, the motives behind the profound re-invention of “biological complementarity” need to be substantiated with concrete shreds of evidence about this principle’s applicability in real-life science experimentation, which we found missing in the literature. This paper discusses such pieces of evidence by confronting Bohr’s complementarity and ion channel modeling practice. We examine whether and to what extent this principle might assist in developing ion channel models incorporating both deterministic and stochastic solutions. According to the “mutual exclusiveness of experimental setups” version of Bohr’s complementarity, this principle is needed when two mutually exclusive perspectives or approaches are right, necessary in a particular context, and are not contradictory as they arise in mutually exclusive conditions (mutually exclusive experimental or modeling setups). A detailed examination of the modeling practice reveals that both solutions are often used simultaneously in a single ion channel model, suggesting that the opposite conceptual frameworks can coexist in the same modeling setup. We concluded that Bohr’s complementarity might find applications in these complex modeling setups but only through its realistic phenomenological interpretation that allows applying different modes of description regardless of the nature of the underlying ion channel opening process. Also, we propose the combined use of complementarity and Complex thinking in building the multifaceted ion channel models. Overall, this paper’s results support the efforts to establish a more general form of complementarity to meet today’s complexity theory-inspired life sciences modeling demands.

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对玻尔互补性的更普遍理解:来自离子通道建模的见解
一些当代理论家,如Mazzocchi、Theise和Kafatos相信,改革后的互补性可能会重新定义我们如何在21世纪的生命科学研究中利用复杂性理论。然而,“生物互补性”的深刻重新发明背后的动机需要用关于这一原理在现实科学实验中的适用性的具体证据来证实,而我们在文献中发现了这一点。本文通过面对玻尔的互补性和离子通道建模实践来讨论这些证据。我们研究了这一原理是否以及在多大程度上有助于开发包含确定性和随机性解决方案的离子通道模型。根据玻尔互补性的“实验设置的互斥性”版本,当两个互斥的观点或方法是正确的,在特定的背景下是必要的,并且在互斥的条件下(互斥的实验或建模设置)出现时并不矛盾时,就需要这一原则。对建模实践的详细检查表明,这两种解决方案通常在单个离子通道模型中同时使用,这表明相反的概念框架可以在同一建模设置中共存。我们得出结论,玻尔的互补性可能会在这些复杂的建模设置中找到应用,但只有通过其现实的现象学解释,无论潜在离子通道打开过程的性质如何,都可以应用不同的描述模式。此外,我们建议在构建多方面离子通道模型时,结合互补性和复杂性思维。总的来说,本文的结果支持建立一种更通用的互补形式,以满足当今复杂性理论启发的生命科学建模需求。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Acta Biotheoretica
Acta Biotheoretica 生物-生物学
CiteScore
2.70
自引率
7.70%
发文量
19
审稿时长
3 months
期刊介绍: Acta Biotheoretica is devoted to the promotion of theoretical biology, encompassing mathematical biology and the philosophy of biology, paying special attention to the methodology of formation of biological theory. Papers on all kind of biological theories are welcome. Interesting subjects include philosophy of biology, biomathematics, computational biology, genetics, ecology and morphology. The process of theory formation can be presented in verbal or mathematical form. Moreover, purely methodological papers can be devoted to the historical origins of the philosophy underlying biological theories and concepts. Papers should contain clear statements of biological assumptions, and where applicable, a justification of their translation into mathematical form and a detailed discussion of the mathematical treatment. The connection to empirical data should be clarified. Acta Biotheoretica also welcomes critical book reviews, short comments on previous papers and short notes directing attention to interesting new theoretical ideas.
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