Gene expression alterations from reversible to irreversible stages during coral metamorphosis.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2022-01-25 DOI:10.1186/s40851-022-00187-1
Yuu Ishii, Masayuki Hatta, Ryusaku Deguchi, Masakado Kawata, Shinichiro Maruyama
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Abstract

For corals, metamorphosis from planktonic larvae to sedentary polyps is an important life event, as it determines the environment in which they live for a lifetime. Although previous studies on the reef-building coral Acropora have clarified a critical time point during metamorphosis when cells are committed to their fates, as defined by an inability to revert back to their previous states as swimming larvae (here referred to as the "point of no return"), the molecular mechanisms of this commitment to a fate remain unclear. To address this issue, we analyzed the transcriptomic changes before and after the point of no return by inducing metamorphosis of Acropora tenuis with Hym-248, a metamorphosis-inducing neuropeptide. Gene Ontology and pathway enrichment analysis of the 5893 differentially expressed genes revealed that G protein-coupled receptors (GPCRs) were enriched, including GABA receptor and Frizzled gene subfamilies, which showed characteristic temporal expression patterns. The GPCRs were then classified by comparison with those of Homo sapiens, Nematostella vectensis and Platynereis dumerilii. Classification of the differentially expressed genes into modules based on expression patterns showed that some modules with large fluctuations after the point of no return were biased toward functions such as protein metabolism and transport. This result suggests that in precommitted larvae, different types of GPCR genes function to ensure a proper environment, whereas in committed larvae, intracellular protein transport and proteolysis may cause a loss of the reversibility of metamorphosis as a result of cell differentiation.

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珊瑚蜕变过程中从可逆到不可逆的基因表达变化。
对于珊瑚来说,从浮游幼虫到不动的珊瑚虫的蜕变是一个重要的生命事件,因为它决定了它们一生生活的环境。尽管先前对造礁珊瑚Acropora的研究已经阐明了细胞在蜕变过程中对其命运的一个关键时间点,即细胞无法恢复到游泳幼虫之前的状态(这里称为“不归路”),但这种对命运的承诺的分子机制仍不清楚。为了解决这个问题,我们分析了用Hym-248(一种诱导变态的神经肽)诱导小Acropora tenuis变态前后的转录组变化。对5893个差异表达基因的基因本体和通路富集分析显示,G蛋白偶联受体(gpcr)富集,包括GABA受体和Frizzled基因亚家族,并表现出特有的时间表达模式。然后将这些gpcr与智人、vectensis Nematostella和Platynereis dumerilii的gpcr进行分类。基于表达模式对差异表达基因的模块分类表明,一些在不回归点之后波动较大的模块偏向于蛋白质代谢和运输等功能。这一结果表明,在承诺幼虫中,不同类型的GPCR基因的功能确保了适当的环境,而在承诺幼虫中,细胞内蛋白质运输和蛋白质水解可能导致细胞分化导致变态的可逆性丧失。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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