Integrative illustration of a JCVI-syn3A minimal cell.

IF 1.5 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Integrative Bioinformatics Pub Date : 2022-06-27 DOI:10.1515/jib-2022-0013
David S Goodsell
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Abstract

Data from genomics, proteomics, structural biology and cryo-electron microscopy are integrated into a structural illustration of a cross section through an entire JCVI-syn3.0 minimal cell. The illustration is designed with several goals: to inspire excitement in science, to depict the underlying scientific results accurately, and to be feasible in traditional media. Design choices to achieve these goals include reduction of visual complexity with simplified representations, use of orthographic projection to retain scale relationships, and an approach to color that highlights functional compartments of the cell. Given that this simple cell provides an attractive laboratory for exploring the central processes needed for life, several functional narratives are included in the illustration, including division of the cell and the first depiction of an entire cellular proteome. The illustration lays the foundation for 3D molecular modeling of this cell.

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JCVI-syn3A 最小细胞的综合图示。
来自基因组学、蛋白质组学、结构生物学和低温电子显微镜的数据被整合到整个 JCVI-syn3.0 最小细胞横截面的结构插图中。插图的设计有几个目标:激发对科学的兴趣,准确描述基本的科学成果,并在传统媒体中可行。为实现这些目标,我们在设计上作了如下选择:用简化的表现手法降低视觉复杂性,使用正投影法保留比例关系,以及用色彩突出细胞的功能区。鉴于这个简单的细胞为探索生命所需的核心过程提供了一个极具吸引力的实验室,插图中包含了几个功能性叙述,包括细胞的分裂和对整个细胞蛋白质组的首次描述。该插图为该细胞的三维分子建模奠定了基础。
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来源期刊
Journal of Integrative Bioinformatics
Journal of Integrative Bioinformatics Medicine-Medicine (all)
CiteScore
3.10
自引率
5.30%
发文量
27
审稿时长
12 weeks
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