Increasing the bulk of the 1TEL-target linker and retaining the 10×His tag in a 1TEL-CMG2-vWa construct improves crystal order and diffraction limits.

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2023-10-01 Epub Date: 2023-09-25 DOI:10.1107/S2059798323007246
Parag L Gajjar, Maria J Pedroza Romo, Celeste M Litchfield, Miles Callahan, Nathan Redd, Supeshala Nawarathnage, Sara Soleimani, Jacob Averett, Elijah Wilson, Andrew Lewis, Cameron Stewart, Yi Jie Tseng, Tzanko Doukov, Andrey Lebedev, James D Moody
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Abstract

TELSAM-fusion crystallization has the potential to become a revolutionary tool for the facile crystallization of proteins. TELSAM fusion can increase the crystallization rate and enable crystallization at low protein concentrations, in some cases with minimal crystal contacts [Nawarathnage et al. (2022), Open Biol. 12, 210271]. Here, requirements for the linker composition between 1TEL and a fused CMG2 vWa domain were investigated. Ala-Ala, Ala-Val, Thr-Val and Thr-Thr linkers were evaluated, comparing metrics for crystallization propensity and crystal order. The effect on crystallization of removing or retaining the purification tag was then tested. It was discovered that increasing the linker bulk and retaining the 10×His purification tag improved the diffraction resolution, likely by decreasing the number of possible vWa-domain orientations in the crystal. Additionally, it was discovered that some vWa-domain binding modes are correlated with scrambling of the 1TEL polymer orientation in crystals and an effective mitigation strategy for this pathology is presented.

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增加1TEL靶连接体的体积并在1TEL-CMG2-vWa结构中保留10×His标签提高了晶体的有序性和衍射极限。
TELSAM融合结晶有可能成为蛋白质容易结晶的革命性工具。TELSAM融合可以提高结晶速率,并在低蛋白浓度下实现结晶,在某些情况下具有最小的晶体接触[Nawarathnage等人(2022),Open Biol.12110271]。在此,研究了1TEL和融合的CMG2-vWa结构域之间的连接体组成的要求。评估Ala-Ala、Ala-Val、Thr-Val和Thr-Thr连接体,比较结晶倾向和晶体顺序的指标。然后测试去除或保留纯化标签对结晶的影响。研究发现,增加连接体体积并保留10×His纯化标签提高了衍射分辨率,可能是通过减少晶体中可能的vWa结构域取向的数量。此外,还发现一些vWa结构域结合模式与晶体中1TEL聚合物取向的紊乱有关,并提出了一种有效的缓解这种病理的策略。
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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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